Browse Element(s) Details

Os.46439.1.S1_at

Description

gb:CB671863
DB_XREF= gi:29675588
DB_XREF=OSJNEe05K03.r
CLONE=OSJNEe05K03
TID=Os.46439.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.46439 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181919.1 (A.thaliana) putative methyl chloride transferase (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06040	11/11	thiol methyltransferase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05990	OsAffx.10929.1.S1_x_at	1/11	6	+	2748784..2753800	expressed protein
LOC_Os06g06000	OsAffx.4737.1.S1_at	11/11	6	+	2758259..2761128	hypothetical protein
LOC_Os06g06014	Os.10264.1.S1_at	11/11	6	+	2765148..2769430	expressed protein
LOC_Os06g06014	OsAffx.15280.1.S1_at	11/11	6	+	2765148..2769430	expressed protein
LOC_Os06g06014	Os.10264.2.S1_at	10/11	6	+	2765148..2769430	expressed protein
LOC_Os06g06030	Os.10995.1.S1_at	11/11	6	+	2770074..2773038	Proteasome subunit beta type 5 precursor, putative, expressed
LOC_Os06g06040	Os.46439.1.S1_at	11/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06040	Os.21058.1.S1_s_at	11/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06040	OsAffx.15281.1.S1_at	9/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06050	Os.18946.2.S1_at	11/11	6	+	2779789..2784227	F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06050	Os.18946.1.S1_at	11/11	6	+	2779789..2784227	F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06060	NA	NA	6	+	2785775..2789141	retrotransposon protein, putative, unclassified
LOC_Os06g06070	NA	NA	6	+	2790043..2792657	retrotransposon protein, putative, unclassified
LOC_Os06g06080	Os.10381.1.S1_at	11/11	6	+	2802043..2805272	serine esterase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008168	molecular_function	methyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46439.1.S1_at--523--11	1	Chr06:2775308..2775332 (25 bp)	ATTCTTGTGGCATCTTAAATGACCT	LOC_Os06g06040
Os.46439.1.S1_at--1082--1053	1	Chr06:2775307..2775331 (25 bp)	TTCTTGTGGCATCTTAAATGACCTT	LOC_Os06g06040
Os.46439.1.S1_at--69--959	1	Chr06:2775306..2775330 (25 bp)	TCTTGTGGCATCTTAAATGACCTTT	LOC_Os06g06040
Os.46439.1.S1_at--933--361	1	Chr06:2775305..2775329 (25 bp)	CTTGTGGCATCTTAAATGACCTTTA	LOC_Os06g06040
Os.46439.1.S1_at--299--1083	1	Chr06:2775304..2775328 (25 bp)	TTGTGGCATCTTAAATGACCTTTAT	LOC_Os06g06040
Os.46439.1.S1_at--52--867	1	Chr06:2775303..2775327 (25 bp)	TGTGGCATCTTAAATGACCTTTATT	LOC_Os06g06040
Os.46439.1.S1_at--1002--751	1	Chr06:2775302..2775326 (25 bp)	GTGGCATCTTAAATGACCTTTATTA	LOC_Os06g06040
Os.46439.1.S1_at--1082--827	1	Chr06:2775300..2775324 (25 bp)	GGCATCTTAAATGACCTTTATTAAT	LOC_Os06g06040
Os.46439.1.S1_at--556--299	1	Chr06:2775291..2775315 (25 bp)	AATGACCTTTATTAATATACACAGG	LOC_Os06g06040
Os.46439.1.S1_at--336--311	1	Chr06:2775278..2775302 (25 bp)	AATATACACAGGTTCTTTTGTGCAC	LOC_Os06g06040
Os.46439.1.S1_at--925--23	1	Chr06:2775277..2775301 (25 bp)	ATATACACAGGTTCTTTTGTGCACT	LOC_Os06g06040

Target Sequence

ATTCTTGTGGCATCTTAAATGACCTTTATTAATATACACAGGTTCTTTTGTGCACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis