Browse Element(s) Details


Os.10264.1.S1_at

Description gb:AK099903.1
DB_XREF= gi:32985112
TID=Os.10264.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114I22, full insert sequence.
FL= gb:AK099903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0601411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05980Os.27301.1.S1_at11/116+2742657..2748184Solute carrier family 35 member C2, putative, expressed
LOC_Os06g05990OsAffx.10929.1.S1_x_at1/116+2748784..2753800expressed protein
LOC_Os06g06000OsAffx.4737.1.S1_at11/116+2758259..2761128hypothetical protein
LOC_Os06g06014Os.10264.1.S1_at11/116+2765148..2769430expressed protein
LOC_Os06g06014OsAffx.15280.1.S1_at11/116+2765148..2769430expressed protein
LOC_Os06g06014Os.10264.2.S1_at10/116+2765148..2769430expressed protein
LOC_Os06g06030Os.10995.1.S1_at11/116+2770074..2773038Proteasome subunit beta type 5 precursor, putative, expressed
LOC_Os06g06040Os.46439.1.S1_at11/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06040Os.21058.1.S1_s_at11/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06040OsAffx.15281.1.S1_at9/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06050Os.18946.2.S1_at11/116+2779789..2784227F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06050Os.18946.1.S1_at11/116+2779789..2784227F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06060NANA6+2785775..2789141retrotransposon protein, putative, unclassified
LOC_Os06g06070NANA6+2790043..2792657retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10264.1.S1_at--170--4831Chr06:2767813..2767837 (25 bp)
GCTCATCACAGTCTGGTATGTAGCA
LOC_Os06g06014
Os.10264.1.S1_at--897--8751Chr06:2767795..2767819 (25 bp)
TGTAGCAGAGCTTCAGTGTTTGTAG
LOC_Os06g06014
Os.10264.1.S1_at--981--10411Chr06:2767716..2767740 (25 bp)
TTATCTTGAATTCTGGGCTCTACCT
LOC_Os06g06014
Os.10264.1.S1_at--2--7591Chr06:2767702..2767726 (25 bp)
GGGCTCTACCTAAGATTATCTGATC
LOC_Os06g06014
Os.10264.1.S1_at--220--2391Chr06:2767657..2767681 (25 bp)
AAACTGCTGTTCTTTGATTACCTGA
LOC_Os06g06014
Os.10264.1.S1_at--699--51Chr06:2767633..2767657 (25 bp)
ATTGAGCATTAGCTCATTCTCCCAC
LOC_Os06g06014
Os.10264.1.S1_at--587--4171Chr06:2767613..2767637 (25 bp)
CCCACCTGAGCACTAGATATCATAT
LOC_Os06g06014
Os.10264.1.S1_at--321--1351Chr06:2767585..2767609 (25 bp)
AGAGAGGTCTCTACCTCTGTGACCA
LOC_Os06g06014
Os.10264.1.S1_at--983--3771Chr06:2767571..2767595 (25 bp)
CTCTGTGACCAGTTGTATTCATTTG
LOC_Os06g06014
Os.10264.1.S1_at--637--51Chr06:2767544..2767568 (25 bp)
ATTGCTTGAAACGAAGGTCCAGCTA
LOC_Os06g06014
Os.10264.1.S1_at--85--3291Chr06:2767525..2767549 (25 bp)
CAGCTAGTTGGGTGTTGCCCTTTAT
LOC_Os06g06014
Target Sequence 
GCTCATCACAGTCTGGTATGTAGCAGAGCTTCAGTGTTTGTAGGATAATTCCACTAATAAGTGTAATTGAGGGCAAGCGT
ATAAGTACAATAAATCATTATCTTGAATTCTGGGCTCTACCTAAGATTATCTGATCTACACTATTGCAGTTTATATAAAC
TGCTGTTCTTTGATTACCTGATTGAGCATTAGCTCATTCTCCCACCTGAGCACTAGATATCATATTAGAGAGAGGTCTCT
ACCTCTGTGACCAGTTGTATTCATTTGTAATTGCTTGAAACGAAGGTCCAGCTAGTTGGGTGTTGCCCTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis