Browse Element(s) Details


Os.10995.1.S1_at

Description gb:AB026567.1
DB_XREF= gi:8671509
GEN=OsPBE1
TID=Os.10995.1
CNT=62
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10995 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPBE1 mRNA for beta 5 subunit of 20S proteasome, complete cds.
PROD=beta 5 subunit of 20S proteasome
FL= gb:AK104520.1 gb:AB026567.1 gb:AK071652.1 gb:AK104361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0603011/11Proteasome subunit beta type 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05980Os.27301.1.S1_at11/116+2742657..2748184Solute carrier family 35 member C2, putative, expressed
LOC_Os06g05990OsAffx.10929.1.S1_x_at1/116+2748784..2753800expressed protein
LOC_Os06g06000OsAffx.4737.1.S1_at11/116+2758259..2761128hypothetical protein
LOC_Os06g06014Os.10264.1.S1_at11/116+2765148..2769430expressed protein
LOC_Os06g06014OsAffx.15280.1.S1_at11/116+2765148..2769430expressed protein
LOC_Os06g06014Os.10264.2.S1_at10/116+2765148..2769430expressed protein
LOC_Os06g06030Os.10995.1.S1_at11/116+2770074..2773038Proteasome subunit beta type 5 precursor, putative, expressed
LOC_Os06g06040Os.46439.1.S1_at11/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06040Os.21058.1.S1_s_at11/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06040OsAffx.15281.1.S1_at9/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06050Os.18946.2.S1_at11/116+2779789..2784227F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06050Os.18946.1.S1_at11/116+2779789..2784227F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06060NANA6+2785775..2789141retrotransposon protein, putative, unclassified
LOC_Os06g06070NANA6+2790043..2792657retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0004175molecular_functionendopeptidase activity
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10995.1.S1_at--1162--6611Chr06:2771180..2771204 (25 bp)
GTTGGATCAGGTTCTCTGTATGCCT
LOC_Os06g06030
Os.10995.1.S1_at--765--7411Chr06:2770508..2770980 (25 bp)
GTGTTAGCGTTTACCATGTTGGCCC
LOC_Os06g06030
Os.10995.1.S1_at--35--731Chr06:2770493..2770517 (25 bp)
ATGTTGGCCCGAACGGCTGGACGAA
LOC_Os06g06030
Os.10995.1.S1_at--96--3891Chr06:2770334..2770358 (25 bp)
CTGTGAACTGTAGAAGCGCCCTTGT
LOC_Os06g06030
Os.10995.1.S1_at--267--1651Chr06:2770320..2770344 (25 bp)
AGCGCCCTTGTCTATGAACTTGTTT
LOC_Os06g06030
Os.10995.1.S1_at--282--8771Chr06:2770300..2770324 (25 bp)
TGTTTGGACATGTTTCTCTCGTCGA
LOC_Os06g06030
Os.10995.1.S1_at--290--6451Chr06:2770255..2770279 (25 bp)
GATCAGCTGATGTTTCTCATTAACT
LOC_Os06g06030
Os.10995.1.S1_at--305--10471Chr06:2770230..2770254 (25 bp)
TTACGCTACTGCTACCGCAAATGTG
LOC_Os06g06030
Os.10995.1.S1_at--523--10651Chr06:2770171..2770195 (25 bp)
TTCCTTTACATTGGTAGTGCCCCGA
LOC_Os06g06030
Os.10995.1.S1_at--711--6751Chr06:2770122..2770146 (25 bp)
GTTCACCTATGTTTCTCGATATCAC
LOC_Os06g06030
Os.10995.1.S1_at--423--251Chr06:2770104..2770128 (25 bp)
ATATCACGCCTTTTCGTTGCTGAAT
LOC_Os06g06030
Target Sequence 
GTTGGATCAGGTTCTCTGTATGCCTATGGTATCTTGGACGAGGGTTACCGCTATGTGATGCCAGTTGAGGAAGCTGCTGA
GTTAGCAAGGCGGGCTATTTACCAAGCTACATTCCGTGATGGGGCAAGTGGTGGTTGTGTTAGCGTTTACCATGTTGGCC
CGAACGGCTGGACGAAGCTTTCTGGAGATGATGTTGGGGAGCTGCACTACAAGTACTACCCGGTTGAGGCCACTCCTGTC
GAGCAGGAAATGGCCGATGCCCCAGCTGCTTAAACCTCCCTCTGCCCAATCTGGCGCATGGTATCCAGGGCTGTGAACTG
TAGAAGCGCCCTTGTCTATGAACTTGTTTGGACATGTTTCTCTCGTCGATGTTGAGAGATCTCTTTTGAGATCAGCTGAT
GTTTCTCATTAACTTTACGCTACTGCTACCGCAAATGTGATTGTAGACTCGTATAGATGCTTTTTATTCATGTTTCCTTT
ACATTGGTAGTGCCCCGACTCCGTATGCCTTGCCTGTGCTGCGTTCACCTATGTTTCTCGATATCACGCCTTTTCGTTGC
TGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis