Browse Element(s) Details


Os.27301.1.S1_at

Description gb:AK106752.1
DB_XREF= gi:32991961
TID=Os.27301.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-D01, full insert sequence.
FL= gb:AK106752.1 gb:AK072625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0598011/11Solute carrier family 35 member C2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05940Os.56370.1.S1_at11/116+2716877..2720618expressed protein
LOC_Os06g05950Os.27626.1.S1_at11/116+2723130..2725536expressed protein
LOC_Os06g05960NANA6+2731801..2732106hypothetical protein
LOC_Os06g05970OsAffx.25952.1.S1_s_at1/116+2737396..2739453hypothetical protein
LOC_Os06g05980Os.27301.1.S1_at11/116+2742657..2748184Solute carrier family 35 member C2, putative, expressed
LOC_Os06g05990OsAffx.10929.1.S1_x_at1/116+2748784..2753800expressed protein
LOC_Os06g06000OsAffx.4737.1.S1_at11/116+2758259..2761128hypothetical protein
LOC_Os06g06014Os.10264.1.S1_at11/116+2765148..2769430expressed protein
LOC_Os06g06014OsAffx.15280.1.S1_at11/116+2765148..2769430expressed protein
LOC_Os06g06014Os.10264.2.S1_at10/116+2765148..2769430expressed protein
LOC_Os06g06030Os.10995.1.S1_at11/116+2770074..2773038Proteasome subunit beta type 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27301.1.S1_at--1013--7091Chr06:2747310..2747619 (25 bp)
GTCACTTGGATTTTTATGCCCTGAA
LOC_Os06g05980
Os.27301.1.S1_at--1040--591Chr06:2747610..2747634 (25 bp)
ATGCCCTGAAACCATTCATGTCTGC
LOC_Os06g05980
Os.27301.1.S1_at--91--2891Chr06:2747694..2747718 (25 bp)
AAGGGCACTGCTAGACTTGCTGATG
LOC_Os06g05980
Os.27301.1.S1_at--414--1531Chr06:2747751..2747775 (25 bp)
AGCTTGTCCGTCTCCAAACAATGAA
LOC_Os06g05980
Os.27301.1.S1_at--171--8971Chr06:2747772..2747796 (25 bp)
TGAAATGGTTTCTCACTTCTCATCC
LOC_Os06g05980
Os.27301.1.S1_at--919--5892Chr06:2747822..2747846 (25 bp)
GAGCTAACTTCATCGAAATCCCCAT
LOC_Os06g05980
Os.27301.1.S1_at--1077--10311Chr06:2747928..2747952 (25 bp)
TTTCTTCTCTTTGTGCGAGCTGGAA
LOC_Os06g05980
Os.27301.1.S1_at--301--3312Chr06:2767226..2767250 (25 bp)
CACATATTCATTCTTAAACCTCCAC
NONE
Os.27301.1.S1_at--451--2372Chr06:2767241..2767265 (25 bp)
AAACCTCCACATTTTTGGTGCCTAG
NONE
Os.27301.1.S1_at--475--9231Chr06:2748045..2748069 (25 bp)
TCCATATTTGCTGTTCCCTTGAAAG
LOC_Os06g05980
Os.27301.1.S1_at--1093--7631Chr06:2748073..2748097 (25 bp)
GGGAGCAGCCTTTTGATTGTTTGTA
LOC_Os06g05980
Target Sequence 
GTCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTATTGATTGAAACTATAAGTACTTATGGATGTTTCCACT
TAAACGAGGTGTCACGGACAAGGGCACTGCTAGACTTGCTGATGTTCTGCAACCAAACTTAAAAATTATCTGCCGGAGCT
TGTCCGTCTCCAAACAATGAAATGGTTTCTCACTTCTCATCCTTCATTAAATAGCCAGGCAAACTAAGAGCTAACTTCAT
CGAAATCCCCATTTTTGAGAAGATTGGCAGCAGTTGAAATTGTTATGGCTGTTTATATTGGTATTGCCTGAGAATGGACG
TCATTTACGTGTTTTTCTTCTCTTTGTGCGAGCTGGAACATGCACATATTCATTCTTAAACCTCCACATTTTTGGTGCCT
AGGAATATTCATTCTATATAGATCAAATTGTAAGAGTTACCACACATACCTCCATATTTGCTGTTCCCTTGAAAGTTAGG
GAGCAGCCTTTTGATTGTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis