Browse Element(s) Details


Os.56370.1.S1_at

Description gb:AK109934.1
DB_XREF= gi:32995143
TID=Os.56370.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-H01, full insert sequence.
FL= gb:AK109934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0594011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05880Os.10152.1.S1_at11/116+2689220..2692048Profilin-2, putative, expressed
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05920OsAffx.27468.1.S1_at11/116+2709263..2711459Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os06g05930Os.9093.1.S1_at5/116+2713766..2714068hypothetical protein
LOC_Os06g05940Os.56370.1.S1_at11/116+2716877..2720618expressed protein
LOC_Os06g05950Os.27626.1.S1_at11/116+2723130..2725536expressed protein
LOC_Os06g05960NANA6+2731801..2732106hypothetical protein
LOC_Os06g05970OsAffx.25952.1.S1_s_at1/116+2737396..2739453hypothetical protein
LOC_Os06g05980Os.27301.1.S1_at11/116+2742657..2748184Solute carrier family 35 member C2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56370.1.S1_at--54--8391Chr06:2717426..2717450 (25 bp)
GGCGAGCACTACTGGCCGATCAACC
LOC_Os06g05940
Os.56370.1.S1_at--218--471Chr06:2717416..2717440 (25 bp)
ACTGGCCGATCAACCGGACCCGGAT
LOC_Os06g05940
Os.56370.1.S1_at--355--8051Chr06:2717401..2717425 (25 bp)
GGACCCGGATGTGCGAGTCCATCAG
LOC_Os06g05940
Os.56370.1.S1_at--814--1971Chr06:2717269..2717293 (25 bp)
ACATGTTCCACCTCATTACCGAGTA
LOC_Os06g05940
Os.56370.1.S1_at--449--7831Chr06:2717230..2717254 (25 bp)
GGTACAAGCCTACCGTGCCGGCGAA
LOC_Os06g05940
Os.56370.1.S1_at--1138--2591Chr06:2717207..2717231 (25 bp)
AACGCAGTTGAGATCTGTGCCGAGA
LOC_Os06g05940
Os.56370.1.S1_at--892--7671Chr06:2717111..2717135 (25 bp)
GGGTTTGATCCGTGCTCGCTGCCGC
LOC_Os06g05940
Os.56370.1.S1_at--737--6171Chr06:2717009..2717033 (25 bp)
GAGGAGAACATGTAGCAAAGCGAAT
LOC_Os06g05940
Os.56370.1.S1_at--745--2072Chr11:19485954..19486435 (25 bp)
ACATTGTTCATTATTCATATGGATG
NONE
Os.56370.1.S1_at--1119--6751Chr06:2716906..2716930 (25 bp)
GTTAATGAACGTGTGCAATGCAGTC
LOC_Os06g05940
Os.56370.1.S1_at--69--5191Chr06:2716892..2716916 (25 bp)
GCAATGCAGTCTTACAGTGTGAACG
LOC_Os06g05940
Target Sequence 
GGCGAGCACTACTGGCCGATCAACCGGACCCGGATGTGCGAGTCCATCAGGGCCGCCGTCGACTGGGGCAACGCCCACCC
GGCGGCGGCGCGCCGCATCGGCGAGCAGGGGAGCCGGTTCGTGCGGGAGCAGATGGCCATGGACTACGTCTACGACTACA
TGTTCCACCTCATTACCGAGTACGCCAAGCTGCTCCGGTACAAGCCTACCGTGCCGGCGAACGCAGTTGAGATCTGTGCC
GAGAGCATGGCGTGCGCCGCCGCGGCGGGGAGGGAGAGGGAGTGCATGGATGAGTCCGTGGAGGGGTTCGTCGCCGGGTT
TGATCCGTGCTCGCTGCCGCCGCCGTTCACGGAGGAGGAGAAGAGGGAGATCGCCGCTAAGGAGGAGGAGGTGCTGAGGA
AGGTGGCGAAGTTGGAGGAGGAGAACATGTAGCAAAGCGAATGGAAAATGATACTGGATTTTTAAAAGATGATTATTCAC
AATGTAAGACTTTCTAACATTGTTCATTATTCATATGGATGTTAATGAACGTGTGCAATGCAGTCTTACAGTGTGAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis