Browse Element(s) Details


Os.3398.1.S1_s_at

Description gb:AB001886.1
DB_XREF= gi:3618315
TID=Os.3398.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.3398 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for zinc finger protein, complete cds, clone:R2931.
PROD=zinc finger protein
FL= gb:AB001886.1 gb:AK104083.1 gb:AK072231.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0589011/11B-box zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05850NANA6+2669476..2675592retrotransposon protein, putative, unclassified
LOC_Os06g05870OsAffx.27467.1.S1_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870Os.7199.1.S1_s_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05860OsAffx.15279.1.S1_x_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05860Os.26885.1.A1_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05880Os.10152.1.S1_at11/116+2689220..2692048Profilin-2, putative, expressed
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05920OsAffx.27468.1.S1_at11/116+2709263..2711459Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os06g05930Os.9093.1.S1_at5/116+2713766..2714068hypothetical protein
LOC_Os06g05940Os.56370.1.S1_at11/116+2716877..2720618expressed protein
LOC_Os06g05950Os.27626.1.S1_at11/116+2723130..2725536expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3398.1.S1_s_at--157--4891Chr06:2696916..2696940 (25 bp)
GCTTTGCTGAGCATGGTTCTTCTAA
LOC_Os06g05890
Os.3398.1.S1_s_at--564--2951Chr06:2697974..2697998 (25 bp)
AAGGCCTGTTTGTCGAAGGACTTCT
LOC_Os06g05890
Os.3398.1.S1_s_at--681--2851Chr06:2698004..2698028 (25 bp)
AAGTGCCTGACAATCCATGGACAGT
LOC_Os06g05890
Os.3398.1.S1_s_at--913--3371Chr06:2698052..2698076 (25 bp)
CAGCCTCTGGTCTCTATTGGCAAAA
LOC_Os06g05890
Os.3398.1.S1_s_at--153--3091Chr06:2698075..2698099 (25 bp)
AATAATTTGCTTTGCCCTTCGTACG
LOC_Os06g05890
Os.3398.1.S1_s_at--832--9311Chr06:2698115..2698139 (25 bp)
TCCCTGAGATTTCCTCCTTGGAGAA
LOC_Os06g05890
Os.3398.1.S1_s_at--238--5511Chr06:2698146..2698170 (25 bp)
GAACAACTTCACTGTATCTGCTGGT
LOC_Os06g05890
Os.3398.1.S1_s_at--377--3451Chr06:2698189..2698213 (25 bp)
CAGTTTTGATCTGCCGATAGCATCA
LOC_Os06g05890
Os.3398.1.S1_s_at--240--6491Chr06:2698204..2698228 (25 bp)
GATAGCATCAGACACCATTCGGTTT
LOC_Os06g05890
Os.3398.1.S1_s_at--34--10611Chr06:2698221..2698245 (25 bp)
TTCGGTTTAGTTGGCAGGTCACGTT
LOC_Os06g05890
Os.3398.1.S1_s_at--65--6851Chr06:2698341..2698365 (25 bp)
GTTTCGACTATACGTTTGTTGCTGA
LOC_Os06g05890
Target Sequence 
GCTTTGCTGAGCATGGTTCTTCTAAGGGTGACAACGCTAAGCCAGGGAGTGCTGGTGGATCTCCGCAGTGCCGTCTGGCT
GAAGGCCTGTTTGTCGAAGGACTTCTAGGTCAAGTGCCTGACAATCCATGGACAGTGCCTGAGGTCCCCTCGCCACCGAC
AGCCTCTGGTCTCTATTGGCAAAATAATTTGCTTTGCCCTTCGTACGACAGCACCATGTTCGTCCCTGAGATTTCCTCCT
TGGAGAACTCTCAGAACAACTTCACTGTATCTGCTGGTTTGAAGCGCCGAAGGAGGCAGTTTTGATCTGCCGATAGCATC
AGACACCATTCGGTTTAGTTGGCAGGTCACGTTGAGAGGAGGGCTTCTTGCCTGCCTGACCAAAGCCACAAAACACAGGG
ATGGATGATCATCCAGTGGTCAGTCTAAAAATATGTTGTAATGTTTGTGTTTCGACTATACGTTTGTTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3398.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis