Browse Element(s) Details


OsAffx.27467.1.S1_at

Description tigr:9634.m00513
TID=OsAffx.27467.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0587011/11Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g057401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05820Os.9144.1.S1_a_at9/116+2651070..2660303DNA repair protein RadA containing protein, expressed
LOC_Os06g05830Os.47887.2.A1_at11/116+2660305..2662279Protein kinase domain containing protein, expressed
LOC_Os06g05840Os.31312.5.S1_x_at2/116+2665546..2668847retrotransposon protein, putative, unclassified
LOC_Os06g05840Os.31312.2.S1_x_at2/116+2665546..2668847retrotransposon protein, putative, unclassified
LOC_Os06g05850NANA6+2669476..2675592retrotransposon protein, putative, unclassified
LOC_Os06g05870OsAffx.27467.1.S1_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870Os.7199.1.S1_s_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05860OsAffx.15279.1.S1_x_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05860Os.26885.1.A1_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05880Os.10152.1.S1_at11/116+2689220..2692048Profilin-2, putative, expressed
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05920OsAffx.27468.1.S1_at11/116+2709263..2711459Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27467.1.S1_at--939--1591Chr06:2684890..2684914 (25 bp)
AGCTGTTCCATTCCGTAGGGATGTT
LOC_Os06g05870
OsAffx.27467.1.S1_at--90--10071Chr06:2684905..2684929 (25 bp)
TAGGGATGTTCCTCGGTTGCAGAAG
LOC_Os06g05870
OsAffx.27467.1.S1_at--291--7751Chr06:2684935..2684959 (25 bp)
GGTGTATGGTGTCATAACCCTGAAT
LOC_Os06g05870
OsAffx.27467.1.S1_at--48--5251Chr06:2684956..2684977 (22 bp)
GAATGAACCATTTGAGACTTTGTCT
LOC_Os06g05870
OsAffx.27467.1.S1_at--815--6591Chr06:2685214..2685238 (25 bp)
GATTGATCACCTTGTTATTCCTACA
LOC_Os06g05870
OsAffx.27467.1.S1_at--1083--1251Chr06:2685241..2685265 (25 bp)
AGATTATATGTTTGCTCCCTCACTT
LOC_Os06g05870
OsAffx.27467.1.S1_at--59--10731Chr06:2685252..2685276 (25 bp)
TTGCTCCCTCACTTGTGGATATTAG
LOC_Os06g05870
OsAffx.27467.1.S1_at--616--151Chr06:2685272..2685296 (25 bp)
ATTAGTCGAGCTGTTGATTTCATAC
LOC_Os06g05870
OsAffx.27467.1.S1_at--923--6312Chr06:2685478..2685502 (25 bp)
GATGACATACATCCATTGCAAAGCT
LOC_Os06g05870
OsAffx.27467.1.S1_at--657--10231Chr06:2685523..2685543 (21 bp)
TATTGTCTTGTGTTATCTGGTGAAA
LOC_Os06g05870
OsAffx.27467.1.S1_at--873--7411Chr06:2685756..2685780 (25 bp)
GTGTTGCTGACTCGTTCTCAATGGA
LOC_Os06g05870
Target Sequence 
AGCTGTTCCATTCCGTAGGGATGTTCCTCGGTTGCAGAAGCTTGGGGTGTATGGTGTCATAACCCTGAATGAACCATTTG
AGACTTTGTCTCGTGGGATTGATCACCTTGTTATTCCTACAAGAGATTATATGTTTGCTCCCTCACTTGTGGATATTAGT
CGAGCTGTTGATTTCATACATAGAAATGCATCTTGTGGGAGGATGACATACATCCATTGCAAAGCTGGAAGGGGCAGGAG
TACAACTATTGTCTTGTGTTATCTGGTGAAATACAAGAATATGACGCCTTCTACAGCTTTTGAGCATGTGCGGTCTAAAA
GGGCTCGAGTGTTGCTGACTCGTTCTCAATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis