Browse Element(s) Details


Os.51932.1.S1_at

Description gb:AK102929.1
DB_XREF= gi:32988138
TID=Os.51932.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114F14, full insert sequence.
FL= gb:AK102929.1 gb:AK064315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0590011/11Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05850NANA6+2669476..2675592retrotransposon protein, putative, unclassified
LOC_Os06g05870OsAffx.27467.1.S1_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870Os.7199.1.S1_s_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05860OsAffx.15279.1.S1_x_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05860Os.26885.1.A1_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05880Os.10152.1.S1_at11/116+2689220..2692048Profilin-2, putative, expressed
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05920OsAffx.27468.1.S1_at11/116+2709263..2711459Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os06g05930Os.9093.1.S1_at5/116+2713766..2714068hypothetical protein
LOC_Os06g05940Os.56370.1.S1_at11/116+2716877..2720618expressed protein
LOC_Os06g05950Os.27626.1.S1_at11/116+2723130..2725536expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006744biological_processubiquinone biosynthesis
GO:0005740cellular_componentmitochondrial envelope
GO:0004395molecular_functionhexaprenyldihydroxybenzoate methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51932.1.S1_at--596--7491Chr06:2703466..2703490 (25 bp)
GTGGTCCAAACTAGTTACCCCTGAG
LOC_Os06g05900
Os.51932.1.S1_at--968--6851Chr06:2703619..2703643 (25 bp)
GTTTGTGTATAATCCGCTGCGTGGA
LOC_Os06g05900
Os.51932.1.S1_at--425--7811Chr06:2703648..2703672 (25 bp)
GGTCTCTGTCAGATGATCTTACTGT
LOC_Os06g05900
Os.51932.1.S1_at--760--5571Chr06:2703697..2703721 (25 bp)
GAAAGTCGAAACACCCTCTGAGTCA
LOC_Os06g05900
Os.51932.1.S1_at--773--9411Chr06:2703752..2703776 (25 bp)
TCGGGAACTAAAACGTGCGCCACTT
LOC_Os06g05900
Os.51932.1.S1_at--321--7611Chr06:2703876..2703900 (25 bp)
GGGAAGCCCCACTGAGGTGTGCAAA
LOC_Os06g05900
Os.51932.1.S1_at--473--7691Chr06:2703944..2703968 (25 bp)
GGGTAGCTTTGTCTCTTTGATTGTA
LOC_Os06g05900
Os.51932.1.S1_at--1118--7011Chr06:2703976..2704000 (25 bp)
GTACTTCTTTCAAACTTTCCTTCAT
LOC_Os06g05900
Os.51932.1.S1_at--900--7011Chr06:2704009..2704033 (25 bp)
GTACATTTCAGACGAGTTCACCAAA
LOC_Os06g05900
Os.51932.1.S1_at--934--5031Chr06:2704069..2704093 (25 bp)
GCAGATACTGTTTCTCTTGTTATAT
LOC_Os06g05900
Os.51932.1.S1_at--381--10191Chr06:2704091..2704115 (25 bp)
TATAGATGAATTCCCTCTTTCCTTT
LOC_Os06g05900
Target Sequence 
GTGGTCCAAACTAGTTACCCCTGAGGAGAGGAGCTGGTCCTTATACTGGAAAGAGCTTCAATCTCTGTACAAGAAATGGC
CGGGTTTGTGTATAATCCGCTGCGTGGAGAGTGGTCTCTGTCAGATGATCTTACTGTAAATTATATTGCTTATGGCATGA
AGAAAGTCGAAACACCCTCTGAGTCAAATTGACCTCACATCATCAAAATATTTTCGTCGGGAACTAAAACGTGCGCCACT
TGAAAATTTTGGCAGGGATTACAATCAAATAGCACACTGAAAAGTTTTGACTTCTCTTTTTGTTAATTTCGGAAAACAGG
GAGCATGTAGTAGTGTCATGGGGAAGCCCCACTGAGGTGTGCAAACTGCTAAGTTGATAGCAGTGGCAACAGCTAACAAG
TAAAGTAGGGGTAGCTTTGTCTCTTTGATTGTAACTANTAGTACTTCTTTCAAACTTTCCTTCATATAAATAAGTACATT
TCAGACGAGTTCACCAAAGTTCTAGCTGNGATTGCCCTTTTGTNNAACTATATGCAGATACTGTTTCTCTTGTTATATAG
ATGAATTCCCTCTTTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis