Browse Element(s) Details

Os.7199.1.S1_s_at

Description

gb:AU031825
DB_XREF= gi:3767798
DB_XREF=AU031825
CLONE=R1962_6Z
TID=Os.7199.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7199 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05870	11/11	Dual specificity phosphatase, catalytic domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05820	Os.9144.1.S1_a_at	9/11	6	+	2651070..2660303	DNA repair protein RadA containing protein, expressed
LOC_Os06g05830	Os.47887.2.A1_at	11/11	6	+	2660305..2662279	Protein kinase domain containing protein, expressed
LOC_Os06g05840	Os.31312.5.S1_x_at	2/11	6	+	2665546..2668847	retrotransposon protein, putative, unclassified
LOC_Os06g05840	Os.31312.2.S1_x_at	2/11	6	+	2665546..2668847	retrotransposon protein, putative, unclassified
LOC_Os06g05850	NA	NA	6	+	2669476..2675592	retrotransposon protein, putative, unclassified
LOC_Os06g05870	OsAffx.27467.1.S1_at	11/11	6	+	2677431..2687182	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870	Os.7199.1.S1_s_at	11/11	6	+	2677431..2687182	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05860	OsAffx.15279.1.S1_x_at	11/11	6	+	2677979..2682782	Phosphofructokinase family protein, expressed
LOC_Os06g05860	Os.26885.1.A1_at	11/11	6	+	2677979..2682782	Phosphofructokinase family protein, expressed
LOC_Os06g05880	Os.10152.1.S1_at	11/11	6	+	2689220..2692048	Profilin-2, putative, expressed
LOC_Os06g05890	Os.3398.1.S1_s_at	11/11	6	+	2694461..2698473	B-box zinc finger family protein, expressed
LOC_Os06g05900	Os.51932.1.S1_at	11/11	6	+	2698911..2704116	Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910	Os.21888.1.S1_at	10/11	6	+	2705063..2708710	Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05920	OsAffx.27468.1.S1_at	11/11	6	+	2709263..2711459	Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008138	molecular_function	protein tyrosine/serine/threonine phosphatase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7199.1.S1_s_at--582--77	1	Chr06:2685733..2685757 (25 bp)	ATGTGCGGTCTAAAAGGGCTCGAGT	LOC_Os06g05870
Os.7199.1.S1_s_at--534--213	1	Chr06:2686985..2687009 (25 bp)	ACAGTCACAAGCCACTCAGCAGCAG	LOC_Os06g05870
Os.7199.1.S1_s_at--356--347	1	Chr06:2687019..2687043 (25 bp)	CAGGGAATGTGGTATCGGTAACAGA	LOC_Os06g05870
Os.7199.1.S1_s_at--554--79	1	Chr06:2687025..2687049 (25 bp)	ATGTGGTATCGGTAACAGAAGCAGA	LOC_Os06g05870
Os.7199.1.S1_s_at--232--1025	1	Chr06:2687050..2687074 (25 bp)	TTTGGAGAGCTCTGAAGTAACAGCA	LOC_Os06g05870
Os.7199.1.S1_s_at--604--117	1	Chr06:2687065..2687089 (25 bp)	AGTAACAGCAGCTAATATTCCTGAT	LOC_Os06g05870
Os.7199.1.S1_s_at--104--507	1	Chr06:2687072..2687096 (25 bp)	GCAGCTAATATTCCTGATATTACAG	LOC_Os06g05870
Os.7199.1.S1_s_at--297--137	1	Chr06:2687095..2687119 (25 bp)	AGAGCATGCCAGCTTGTCTTCTCAC	LOC_Os06g05870
Os.7199.1.S1_s_at--1012--919	1	Chr06:2687101..2687125 (25 bp)	TGCCAGCTTGTCTTCTCACAAGACT	LOC_Os06g05870
Os.7199.1.S1_s_at--548--63	1	Chr06:2687150..2687174 (25 bp)	ATGCTCTCATGTTTGATTCCATCTC	LOC_Os06g05870
Os.7199.1.S1_s_at--507--377	1	Chr06:2687153..2687177 (25 bp)	CTCTCATGTTTGATTCCATCTCTGA	LOC_Os06g05870

Target Sequence

ATGTGCGGTCTAAAAGGGCTCGAGTGTTNNTGNNNCNTTNNNNNTNGNNGGTGNTTCAAGATTTCAGCAAGAAGAATGCA
GAANCAGAACTTCCCACAGTCACAAGCCACTCAGCAGCAGCATCTCCANCAGGGAATGTGGTATCGGTAACAGAAGCAGA
TTTGGAGAGCTCTGAAGTAACAGCAGCTAATATTCCTGATATTACAGAGCATGCCAGCTTGTCTTCTCACAAGACTACCC
CAACCAAGCCAATGACAAATATGCTCTCATGTTTGATTCCATCTCTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis