Browse Element(s) Details

Os.47887.2.A1_at

Description

gb:AK106925.1
DB_XREF= gi:32992134
TID=Os.47887.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B09, full insert sequence.
FL= gb:AK106925.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05830	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05800	Os.22463.1.S1_at	11/11	6	+	2634909..2640380	RNA recognition motif family protein, expressed
LOC_Os06g05800	OsAffx.15278.1.S1_s_at	11/11	6	+	2634909..2640380	RNA recognition motif family protein, expressed
LOC_Os06g05800	OsAffx.15278.1.S1_at	6/11	6	+	2634909..2640380	RNA recognition motif family protein, expressed
LOC_Os06g05810	NA	NA	6	+	2645016..2645578	hypothetical protein
LOC_Os06g05820	Os.9144.1.S1_a_at	9/11	6	+	2651070..2660303	DNA repair protein RadA containing protein, expressed
LOC_Os06g05830	Os.47887.2.A1_at	11/11	6	+	2660305..2662279	Protein kinase domain containing protein, expressed
LOC_Os06g05840	Os.31312.5.S1_x_at	2/11	6	+	2665546..2668847	retrotransposon protein, putative, unclassified
LOC_Os06g05840	Os.31312.2.S1_x_at	2/11	6	+	2665546..2668847	retrotransposon protein, putative, unclassified
LOC_Os06g05850	NA	NA	6	+	2669476..2675592	retrotransposon protein, putative, unclassified
LOC_Os06g05870	OsAffx.27467.1.S1_at	11/11	6	+	2677431..2687182	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870	Os.7199.1.S1_s_at	11/11	6	+	2677431..2687182	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05860	OsAffx.15279.1.S1_x_at	11/11	6	+	2677979..2682782	Phosphofructokinase family protein, expressed
LOC_Os06g05860	Os.26885.1.A1_at	11/11	6	+	2677979..2682782	Phosphofructokinase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47887.2.A1_at--284--415	1	Chr06:2660876..2660900 (25 bp)	CGCGGAGCAGCGACGTGAACAGCTT	LOC_Os06g05830
Os.47887.2.A1_at--775--131	1	Chr06:2660819..2660843 (25 bp)	AGAGGCCAATTTTCATCGATCGGAA	LOC_Os06g05830
Os.47887.2.A1_at--569--615	1	Chr06:2660784..2660808 (25 bp)	GAGGTCACCAACTTGGTAGCCTTTT	LOC_Os06g05830
Os.47887.2.A1_at--109--697	1	Chr06:2660769..2660793 (25 bp)	GTAGCCTTTTCGCTTCCAATCATTG	LOC_Os06g05830
Os.47887.2.A1_at--773--919	1	Chr06:2660755..2660779 (25 bp)	TCCAATCATTGAAGACGGCGAGCTG	LOC_Os06g05830
Os.47887.2.A1_at--964--719	1	Chr06:2660604..2660628 (25 bp)	GTCGTGGCCATACTCGAGACTGAGC	LOC_Os06g05830
Os.47887.2.A1_at--659--599	1	Chr06:2660589..2660613 (25 bp)	GAGACTGAGCTTGATCTCCTCCTTC	LOC_Os06g05830
Os.47887.2.A1_at--318--781	1	Chr06:2660544..2660568 (25 bp)	GGTCGTCCGATACTCCGATGTGAAT	LOC_Os06g05830
Os.47887.2.A1_at--277--869	1	Chr06:2660526..2660550 (25 bp)	TGTGAATGTGAGTTCGTCCCACCAT	LOC_Os06g05830
Os.47887.2.A1_at--1025--29	1	Chr06:2660473..2660497 (25 bp)	ATAGCTTCAGAATTCCAATCGTCAA	LOC_Os06g05830
Os.47887.2.A1_at--307--1035	1	Chr06:2660351..2660375 (25 bp)	TTTACCTGTTTCTCCTATTTTCATG	LOC_Os06g05830

Target Sequence

CGCGGAGCAGCGACGTGAACAGCTTCGGCGTCGTGATGCTGGAGATGCTCACGGGCAAGAGGCCAATTTTCATCGATCGG
AAGGAGGAGGGCGAGGTCACCAACTTGGTAGCCTTTTCGCTTCCAATCATTGAAGACGGCGAGCTGGGGAGGTTGCTGGA
CAGGCGGCCGGCGGAGCCAACGGCGAGGCAGCTCGAGGCGTTGGAAATGGTGGCGCGGACGGCGGCGCGCTGCGTGCAGC
TGCAGCGGAAGGAGCGACCGGCGATATCGGAAGTCGTGGCCATACTCGAGACTGAGCTTGATCTCCTCCTTCGCGATGGG
TAGAGGTAGAGCGGTCGTCCGATACTCCGATGTGAATGTGAGTTCGTCCCACCATTTGCTGCATCCAAATTCCAACGGAA
AAAATAGCTTCAGAATTCCAATCGTCAAACATAGCTTCAGTAAGATGCTTTTCAAGGAAGACATGTATGAATGTATGCTT
CTTTAACTTGAGTTTCAGACGTCATGTAAAACGATGTAAAGGAAATTTACCTGTTTCTCCTATTTTCATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis