Browse Element(s) Details


Os.22463.1.S1_at

Description gb:AK068636.1
DB_XREF= gi:32978653
TID=Os.22463.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157K21, full insert sequence.
FL= gb:AK068636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0580011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05770OsAffx.15277.1.S1_at11/116+2611136..2611802hypothetical protein
LOC_Os06g05780NANA6+2614721..2621390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g05790OsAffx.4736.1.S1_at10/116+2630870..2634263Transferase family protein, expressed
LOC_Os06g05800Os.22463.1.S1_at11/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05800OsAffx.15278.1.S1_s_at11/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05800OsAffx.15278.1.S1_at6/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05810NANA6+2645016..2645578hypothetical protein
LOC_Os06g05820Os.9144.1.S1_a_at9/116+2651070..2660303DNA repair protein RadA containing protein, expressed
LOC_Os06g05830Os.47887.2.A1_at11/116+2660305..2662279Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22463.1.S1_at--398--10471Chr06:2636043..2636063 (21 bp)
TTACGGATATCGAGTCCTCTACGGC
LOC_Os06g05800
Os.22463.1.S1_at--946--9071Chr06:2636018..2636042 (25 bp)
TGCTATGGATGCTCTACAGGGCACT
LOC_Os06g05800
Os.22463.1.S1_at--1--1091Chr06:2636001..2636025 (25 bp)
AGGGCACTGTGCTAGCTTCTTCTGA
LOC_Os06g05800
Os.22463.1.S1_at--1158--5791Chr06:2635978..2636002 (25 bp)
GACGCTGACGGCTTGCAGATTGAGT
LOC_Os06g05800
Os.22463.1.S1_at--1081--1571Chr06:2635270..2635294 (25 bp)
AGCTCACTAGCTACTTGTTCTACAT
LOC_Os06g05800
Os.22463.1.S1_at--11--2911Chr06:2635210..2635234 (25 bp)
AAGGTATATCATTTGCCATTTGGCA
LOC_Os06g05800
Os.22463.1.S1_at--1092--3111Chr06:2635075..2635099 (25 bp)
AATTTGGTTTCGCTCTCGTTCAGAA
LOC_Os06g05800
Os.22463.1.S1_at--136--9511Chr06:2635047..2635071 (25 bp)
TCTCTGTCAGAGTCGGATCGTTAAT
LOC_Os06g05800
Os.22463.1.S1_at--604--10291Chr06:2635001..2635025 (25 bp)
TTTCCGGAGACAACCAGGCGGCTAA
LOC_Os06g05800
Os.22463.1.S1_at--848--7311Chr06:2634946..2634970 (25 bp)
GTGCTCTTCTTTGTGCATATTGAAC
LOC_Os06g05800
Os.22463.1.S1_at--552--9751Chr06:2634918..2634942 (25 bp)
TAATTTGATGTGCTCTTCTTGCCGC
LOC_Os06g05800
Target Sequence 
TTACGGATATCGAGTCCTCTACGGCTGCTATGGATGCTCTACAGGGCACTGTGCTAGCTTCTTCTGACGCTGACGGCTTG
CAGATTGAGTACGCAAGGTCAAAAATGAGGAAAAGCTAGCTCACTAGCTACTTGTTCTACATCAGCAGTGAGCNCTGACC
ACCGGGGATCGAACATGAAGGTATATCATTTGCCATTTGGCATCCCATGCCAGCACATGTAATCGCCAGGCNGTAGCTGT
GCTCTTTAATTGAATTCTAAGAATATAGATCTGGGCAATCAAACACTTTGTCACAGAGTAGTTGGATCGTTTAATTTGGT
TTCGCTCTCGTTCAGAAACTTCTCTGTCAGAGTCGGATCGTTAATTGNACTTCNNGTTTNNGAAACTTTCCGGAGACAAC
CAGGCGGCTAACNGGCNCTATCANCAATCAATTTNNNNTATGTGCTCTTCTTTGTGCATATTGAACAATTAATTTGATGT
GCTCTTCTTGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis