Browse Element(s) Details


OsAffx.15277.1.S1_at

Description tigr:9634.m00502
TID=OsAffx.15277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0577011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05730Os.53464.1.S1_at10/116+2586931..2587897expressed protein
LOC_Os06g05740Os.7225.1.S1_at10/116+2588022..2591249expressed protein
LOC_Os06g05740OsAffx.27467.1.S1_at1/116+2588022..2591249expressed protein
LOC_Os06g05750Os.51672.2.S1_at11/116+2591770..2593479Transferase family protein, expressed
LOC_Os06g05760OsAffx.5303.1.S1_at11/116+2606882..2607796Ubiquitin family protein
LOC_Os06g05770OsAffx.15277.1.S1_at11/116+2611136..2611802hypothetical protein
LOC_Os06g05780NANA6+2614721..2621390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g05790OsAffx.4736.1.S1_at10/116+2630870..2634263Transferase family protein, expressed
LOC_Os06g05800Os.22463.1.S1_at11/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05800OsAffx.15278.1.S1_s_at11/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05800OsAffx.15278.1.S1_at6/116+2634909..2640380RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15277.1.S1_at--1125--3531Chr06:2611189..2611213 (25 bp)
CATCTCTTTCCAGGGCATGAGGACG
LOC_Os06g05770
OsAffx.15277.1.S1_at--1083--9711Chr06:2611531..2611555 (25 bp)
TCAAGCCATACAGAGACGTCGGCAT
LOC_Os06g05770
OsAffx.15277.1.S1_at--679--331Chr06:2611538..2611562 (25 bp)
ATACAGAGACGTCGGCATTGCGGCA
LOC_Os06g05770
OsAffx.15277.1.S1_at--828--8271Chr06:2611551..2611575 (25 bp)
GGCATTGCGGCAGTGAGCTCACCAT
LOC_Os06g05770
OsAffx.15277.1.S1_at--422--8911Chr06:2611564..2611588 (25 bp)
TGAGCTCACCATTAGAATCCACCAT
LOC_Os06g05770
OsAffx.15277.1.S1_at--63--10451Chr06:2611575..2611599 (25 bp)
TTAGAATCCACCATCTTTCTTGGAG
LOC_Os06g05770
OsAffx.15277.1.S1_at--621--4331Chr06:2611585..2611609 (25 bp)
CCATCTTTCTTGGAGGGAGAATCGA
LOC_Os06g05770
OsAffx.15277.1.S1_at--957--7631Chr06:2611625..2611649 (25 bp)
GGGAGCAGCGCTAACCTTGGAGCTT
LOC_Os06g05770
OsAffx.15277.1.S1_at--946--1731Chr06:2611638..2611662 (25 bp)
ACCTTGGAGCTTGTCTTTGATGTCG
LOC_Os06g05770
OsAffx.15277.1.S1_at--58--10811Chr06:2611648..2611672 (25 bp)
TTGTCTTTGATGTCGACGGCCACAG
LOC_Os06g05770
OsAffx.15277.1.S1_at--388--1951Chr06:2611663..2611687 (25 bp)
ACGGCCACAGCTTCGCCAAGGACGG
LOC_Os06g05770
Target Sequence 
CATCTCTTTCCAGGGCATGAGGACGAGAGAAAGGGGGCGAGGGCGGTGCATCAAGCCATACAGAGACGTCGGCATTGCGG
CAGTGAGCTCACCATTAGAATCCACCATCTTTCTTGGAGGGAGAATCGAGGAGCAAGAAGAGCGGGGAGCAGCGCTAACC
TTGGAGCTTGTCTTTGATGTCGACGGCCACAGCTTCGCCAAGGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis