Browse Element(s) Details


OsAffx.5303.1.S1_at

Description tigr:9634.m00501
TID=OsAffx.5303.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0576011/11Ubiquitin family protein
LOC_Os07g126202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05710OsAffx.4734.1.S1_at11/116+2581783..2582618pollen-specific protein, putative, expressed
LOC_Os06g05720Os.35125.1.S1_at11/116+2583097..2585157expressed protein
LOC_Os06g05730Os.53464.1.S1_at10/116+2586931..2587897expressed protein
LOC_Os06g05740Os.7225.1.S1_at10/116+2588022..2591249expressed protein
LOC_Os06g05740OsAffx.27467.1.S1_at1/116+2588022..2591249expressed protein
LOC_Os06g05750Os.51672.2.S1_at11/116+2591770..2593479Transferase family protein, expressed
LOC_Os06g05760OsAffx.5303.1.S1_at11/116+2606882..2607796Ubiquitin family protein
LOC_Os06g05770OsAffx.15277.1.S1_at11/116+2611136..2611802hypothetical protein
LOC_Os06g05780NANA6+2614721..2621390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g05790OsAffx.4736.1.S1_at10/116+2630870..2634263Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5303.1.S1_at--532--8572Chr07:7213440..7213464 (25 bp)
TGGATCACTGGCCTCTAGGTGCCTA
LOC_Os07g12620
OsAffx.5303.1.S1_at--1129--1472Chr07:7213620..7213644 (25 bp)
AGCACATGGATTTCTTGTTGGAGGC
LOC_Os07g12620
OsAffx.5303.1.S1_at--721--8072Chr07:7213675..7213699 (25 bp)
GGAGCAGCTGAATGACAACTTCGAG
NONE
OsAffx.5303.1.S1_at--969--2991Chr06:2607620..2607644 (25 bp)
AATGACAACTTCGAGGGCAGCCCTG
LOC_Os06g05760
OsAffx.5303.1.S1_at--3--1091Chr06:2607633..2607657 (25 bp)
AGGGCAGCCCTGAGACGCCATTGCT
LOC_Os06g05760
OsAffx.5303.1.S1_at--158--7631Chr06:2607666..2607690 (25 bp)
GGGACTACCACTTCGAGCTCAACAG
LOC_Os06g05760
OsAffx.5303.1.S1_at--571--1711Chr06:2607672..2607696 (25 bp)
ACCACTTCGAGCTCAACAGGGTGGC
LOC_Os06g05760
OsAffx.5303.1.S1_at--269--8971Chr06:2607699..2607723 (25 bp)
TGAACGAGGAACTGTCACTGGAGGC
LOC_Os06g05760
OsAffx.5303.1.S1_at--718--2551Chr06:2607708..2607732 (25 bp)
AACTGTCACTGGAGGCGCACGGTGT
LOC_Os06g05760
OsAffx.5303.1.S1_at--206--7752Chr07:7213793..7213817 (25 bp)
GGTGTCGTTGAGTCTGGTGAAACCA
NONE
OsAffx.5303.1.S1_at--106--6112Chr07:7213802..7213826 (25 bp)
GAGTCTGGTGAAACCATCATGATAA
NONE
Target Sequence 
TGGATCACTGGCCTCTAGGTGCCTANGTCGAGTTCGACTCCGGCGTGGTGGAGGTGACNATTGTTGATTGCAANAAGATG
GTGGAGNCAGGAAGCAGCNGTGGCAGCAACCGCAANACCAANGTGGATGCCAACNACANTAAGATTGTGATCGGGNTNCT
GATGGAGGGCTCACNCTCNCAGCACATGGATTTCTTGTTGGAGGCNTCGCCNGCGGACATGGTCGCCACCCTGNNGGAGC
AGCTGAATGACAACTTCGAGGGCAGCCCTGAGACGCCATTGCTGGCCGAAGGGGACTACCACTTCGAGCTCAACAGGGTG
GCCATGAACGAGGAACTGTCACTGGAGGCGCACGGTGTCGTTGAGTCTGGTGAAACCATCATGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis