Browse Element(s) Details


Os.35125.1.S1_at

Description gb:AK068890.1
DB_XREF= gi:32978915
TID=Os.35125.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002O16, full insert sequence.
FL= gb:AK068890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0572011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05660Os.6238.1.S1_at11/116+2557018..2561217nucleosome/chromatin assembly factor group A, putative, expressed
LOC_Os06g05670Os.54255.1.S1_at10/116+2564187..2566639expressed protein
LOC_Os06g05680Os.45957.4.S1_x_at6/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05680Os.45957.3.S1_x_at2/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05690Os.2260.1.S1_at11/116+2573180..2575677Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os06g05700Os.47826.1.S1_at11/116+2578090..2580721Cysteine synthase, putative, expressed
LOC_Os06g05710OsAffx.4734.1.S1_at11/116+2581783..2582618pollen-specific protein, putative, expressed
LOC_Os06g05720Os.35125.1.S1_at11/116+2583097..2585157expressed protein
LOC_Os06g05730Os.53464.1.S1_at10/116+2586931..2587897expressed protein
LOC_Os06g05740Os.7225.1.S1_at10/116+2588022..2591249expressed protein
LOC_Os06g05740OsAffx.27467.1.S1_at1/116+2588022..2591249expressed protein
LOC_Os06g05750Os.51672.2.S1_at11/116+2591770..2593479Transferase family protein, expressed
LOC_Os06g05760OsAffx.5303.1.S1_at11/116+2606882..2607796Ubiquitin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35125.1.S1_at--935--5931Chr06:2584285..2584309 (25 bp)
GAGCAGAATTGCAAGGCCGCCTACT
LOC_Os06g05720
Os.35125.1.S1_at--1065--1331Chr06:2583643..2583662 (20 bp)
AGAGTGGTACTCATCTACTGCCGTT
LOC_Os06g05720
Os.35125.1.S1_at--828--2651Chr06:2583544..2583568 (25 bp)
AAGCCTACTGCTGATAACTGTCCAC
LOC_Os06g05720
Os.35125.1.S1_at--542--9031Chr06:2583494..2583518 (25 bp)
TGCACTTGAGCATGTCAGCCAGTAT
LOC_Os06g05720
Os.35125.1.S1_at--192--5271Chr06:2583432..2583456 (25 bp)
GAATCCTGTTCCGTCAGACTTGCAT
LOC_Os06g05720
Os.35125.1.S1_at--173--551Chr06:2583396..2583420 (25 bp)
ATCCCTTACAGCGTTGCATCCAAGA
LOC_Os06g05720
Os.35125.1.S1_at--1152--8811Chr06:2583365..2583389 (25 bp)
TGATATTCCCAAGCCACTTGCTAAG
LOC_Os06g05720
Os.35125.1.S1_at--525--3431Chr06:2583297..2583321 (25 bp)
CAGTCTCCACCCAGTAGGTAGTTAG
LOC_Os06g05720
Os.35125.1.S1_at--448--10031Chr06:2583279..2583303 (25 bp)
TAGTTAGGCCTTCTAGTTCAGTGGT
LOC_Os06g05720
Os.35125.1.S1_at--803--211Chr06:2583162..2583186 (25 bp)
ATTTGTTGCTGTGTCATGCTTGGTA
LOC_Os06g05720
Os.35125.1.S1_at--1118--5331Chr06:2583106..2583130 (25 bp)
GAAGTTCTCTGTGGTATGGCACTTA
LOC_Os06g05720
Target Sequence 
GAGCAGAATTGCAAGGCCGCCTACTCAGAGTGGTACTCATCTACTGCCGTTCCTCAACTAAGCCTCAACATCAGTGGCCC
ATCAAGCAAAAGAATTTCACCTTGGACATAATCTATCTTCATGACAAGCCTACTGCTGATAACTGTCCACAGAAGGTATA
TGATGCTTTGGTTGATGCACTTGAGCATGTCAGCCAGTATGAGGGATACATTCTAGAGACTGGTCAGGGGCTTGCTCGAA
TCCTGTTCCGTCAGACTTGCATTCTTCTGTCGCATCCCTTACAGCGTTGCATCCAAGATGACCTTGATATTCCCAAGCCA
CTTGCTAAGAAAAATATGGTTACTGAAGCTGCGCAGAACGAAGATGGCATGCCAGTCTCCACCCAGTAGGTAGTTAGGCC
TTCTAGTTCAGTGGTTTGCATCATGAAGTCAACTCAAGAGCTTCATTTCGTTTTATTTGTTTGCATTAAGGTTGTTCTGT
GTAATGCAAATGACCAATTGAATGTCAATTTGTTGCTGTGTCATGCTTGGTATTGCGTTGAACTTGCAGATGCACATCAT
ACAGAAGTTCTCTGTGGTATGGCACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis