Browse Element(s) Details


Os.54255.1.S1_at

Description gb:AK102827.1
DB_XREF= gi:32988036
TID=Os.54255.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033109D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109D03, full insert sequence.
FL= gb:AK102827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0567010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05620OsAffx.27465.1.S1_at11/116+2541031..2542344F-box domain containing protein
LOC_Os06g05630Os.14118.1.S1_at11/116+2545953..2548252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05640OsAffx.27466.1.S1_at11/116+2550070..2553992hypothetical protein
LOC_Os06g05640Os.9361.1.S1_at1/116+2550070..2553992hypothetical protein
LOC_Os06g05650Os.20357.1.S1_at7/116+2554517..2555067NA
LOC_Os06g05660Os.6238.1.S1_at11/116+2557018..2561217nucleosome/chromatin assembly factor group A, putative, expressed
LOC_Os06g05670Os.54255.1.S1_at10/116+2564187..2566639expressed protein
LOC_Os06g05680Os.45957.4.S1_x_at6/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05680Os.45957.3.S1_x_at2/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05690Os.2260.1.S1_at11/116+2573180..2575677Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os06g05700Os.47826.1.S1_at11/116+2578090..2580721Cysteine synthase, putative, expressed
LOC_Os06g05710OsAffx.4734.1.S1_at11/116+2581783..2582618pollen-specific protein, putative, expressed
LOC_Os06g05720Os.35125.1.S1_at11/116+2583097..2585157expressed protein
LOC_Os06g05730Os.53464.1.S1_at10/116+2586931..2587897expressed protein
LOC_Os06g05740Os.7225.1.S1_at10/116+2588022..2591249expressed protein
LOC_Os06g05740OsAffx.27467.1.S1_at1/116+2588022..2591249expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54255.1.S1_at--40--4151NONE
CGCGTCCAAGAAGCCAGGAGCAGAT
NONE
Os.54255.1.S1_at--1029--3091Chr06:2566311..2566335 (25 bp)
AATAGCAATAGAGATCCCTGAAGGT
LOC_Os06g05670
Os.54255.1.S1_at--173--5091Chr06:2566370..2566394 (25 bp)
GCACCGAGATGCAAACCGTTTCCAG
LOC_Os06g05670
Os.54255.1.S1_at--84--4951Chr06:2566380..2566404 (25 bp)
GCAAACCGTTTCCAGCTTAAACACA
LOC_Os06g05670
Os.54255.1.S1_at--530--9831Chr06:2566397..2566421 (25 bp)
TAAACACAAGTAACAGTGCTGTCCT
LOC_Os06g05670
Os.54255.1.S1_at--880--7251Chr06:2566417..2566441 (25 bp)
GTCCTAATACAGCTTTTCAATTCTA
LOC_Os06g05670
Os.54255.1.S1_at--1149--10591Chr06:2566470..2566494 (25 bp)
TTCTGATGTCAATGTTGTCCTCTCC
LOC_Os06g05670
Os.54255.1.S1_at--1139--10811Chr06:2566484..2566508 (25 bp)
TTGTCCTCTCCTTGCATATTTGCAA
LOC_Os06g05670
Os.54255.1.S1_at--362--2471Chr06:2566508..2566532 (25 bp)
AACAGGACCAGCACTTCGATGGTTT
LOC_Os06g05670
Os.54255.1.S1_at--856--5251Chr06:2566541..2566565 (25 bp)
GAATCCGTACTTATGCTTGTCTTGT
LOC_Os06g05670
Os.54255.1.S1_at--919--5711Chr06:2566615..2566639 (25 bp)
GACTCGGTATAGTTGTTTTATCTGG
LOC_Os06g05670
Target Sequence 
CGCGTCCAAGAAGCCAGGAGCAGATGCTGAGGAGGAACCATTTGCTATTNGCATGAACTCTTTTCCAGTGTNCCTTAGCA
TTGTGAAATAGCAATAGAGATCCCTGAAGGTGATGATGTGTTTTTAGATAATCCTGTATANTTTTGCACCGAGATGCAAA
CCGTTTCCAGCTTAAACACAAGTAACAGTGCTGTCCTAATACAGCTTTTCAATTCTATATAGTGAGCCAATGAGGGGTCT
GTATTTTCTGATGTCAATGTTGTCCTCTCCTTGCATATTTGCAAACAGGACCAGCACTTCGATGGTTTAAATGATTGAAT
CCGTACTTATGCTTGTCTTGTTTGTAATTGTAGAAGTACTGTTTGAATCCAAGTGGAAGATGGAATGGAAGACTCGGTAT
AGTTGTTTTATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis