Browse Element(s) Details


Os.14118.1.S1_at

Description gb:AK099064.1
DB_XREF= gi:32984273
TID=Os.14118.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157L13, full insert sequence.
FL= gb:AK067418.1 gb:AK099064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0563011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05570NANA6+2521000..2521443transposon protein, putative, unclassified
LOC_Os06g05580Os.50550.1.S1_at11/116+2528104..2530646F-box domain containing protein, expressed
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05600OsAffx.15276.1.S1_at11/116+2534431..2535841F-box domain containing protein, expressed
LOC_Os06g05610Os.23589.1.A1_at11/116+2536904..2538470F-box domain containing protein, expressed
LOC_Os06g05620OsAffx.27465.1.S1_at11/116+2541031..2542344F-box domain containing protein
LOC_Os06g05630Os.14118.1.S1_at11/116+2545953..2548252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05640OsAffx.27466.1.S1_at11/116+2550070..2553992hypothetical protein
LOC_Os06g05640Os.9361.1.S1_at1/116+2550070..2553992hypothetical protein
LOC_Os06g05650Os.20357.1.S1_at7/116+2554517..2555067NA
LOC_Os06g05660Os.6238.1.S1_at11/116+2557018..2561217nucleosome/chromatin assembly factor group A, putative, expressed
LOC_Os06g05670Os.54255.1.S1_at10/116+2564187..2566639expressed protein
LOC_Os06g05680Os.45957.4.S1_x_at6/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05680Os.45957.3.S1_x_at2/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05690Os.2260.1.S1_at11/116+2573180..2575677Cysteine synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14118.1.S1_at--169--5371Chr06:2547735..2547759 (25 bp)
GAAGACGAGGGTCTACCTCTGCAAC
LOC_Os06g05630
Os.14118.1.S1_at--890--1631Chr06:2547790..2547814 (25 bp)
AGCGACTTCGTGTACTTCGACGGTG
LOC_Os06g05630
Os.14118.1.S1_at--1116--10511Chr06:2547822..2547846 (25 bp)
TTCAGAGGCGGCCAATCTTGTCATC
LOC_Os06g05630
Os.14118.1.S1_at--935--10031Chr06:2547878..2547902 (25 bp)
TAGTTACCTAACTCACTCGGTCTGA
LOC_Os06g05630
Os.14118.1.S1_at--514--7811Chr06:2547896..2547920 (25 bp)
GGTCTGACTCTGAACTACCATGGCA
LOC_Os06g05630
Os.14118.1.S1_at--648--5291Chr06:2547928..2547952 (25 bp)
GAAGGCGCTACAGTTCATCATCAAT
LOC_Os06g05630
Os.14118.1.S1_at--1022--10571Chr06:2547996..2548020 (25 bp)
TTCTCCAGTGATCCATTCGCATATA
LOC_Os06g05630
Os.14118.1.S1_at--92--9851Chr06:2548043..2548067 (25 bp)
TAAATATGTGCGTCAGTCTCCTACT
LOC_Os06g05630
Os.14118.1.S1_at--535--1151Chr06:2548057..2548081 (25 bp)
AGTCTCCTACTGACCTGCATAACTG
LOC_Os06g05630
Os.14118.1.S1_at--769--5791Chr06:2548127..2548151 (25 bp)
GACGAACAGTGTTACTCTACTCTTT
LOC_Os06g05630
Os.14118.1.S1_at--70--6551Chr06:2548175..2548199 (25 bp)
GATTTTTTCCTACCCAGACTAGCAG
LOC_Os06g05630
Target Sequence 
GAAGACGAGGGTCTACCTCTGCAACCCGGCGACGGCGGGGTTGTGCCGCAACNGCCAGCGACTTCGTGTACTTCGACGGT
GTGCACCCTTCAGAGGCGGCCAATCTTGTCATCGCCGAGTCCACGATATTGGCAGGGATAAGCCTAGTTACCTAACTCAC
TCGGTCTGACTCTGAACTACCATGGCAGGTGCATGAAGGCGCTACAGTTCATCATCAATTAGTTTCGAAGGTTGTGTTGT
GTTTTCAACCTAAGAAAAAGTGTTCTCCAGTGATCCATTCGCATATACAAACAATATAGTTTGTTTCTATAAATATGTGC
GTCAGTCTCCTACTGACCTGCATAACTGCAAGTTAAATCCAACTTAAAACATGTCATCCAACTAAGTATGAATGACGAAC
AGTGTTACTCTACTCTTTTTTTTCTTCTTCATTTTTATTAAGATTTTTTCCTACCCAGACTAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis