Browse Element(s) Details

Os.50550.1.S1_at

Description

gb:AK063946.1
DB_XREF= gi:32973964
TID=Os.50550.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E10, full insert sequence.
FL= gb:AK121786.1 gb:AK063946.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05580	11/11	F-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05530	Os.50965.1.S1_at	11/11	6	+	2504624..2508041	expressed protein
LOC_Os06g05540	OsAffx.15274.1.S1_at	11/11	6	+	2509291..2509872	hypothetical protein
LOC_Os06g05550	Os.5727.1.S1_at	10/11	6	+	2514767..2516940	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560	Os.53045.1.S1_at	11/11	6	+	2517213..2519939	expressed protein
LOC_Os06g05570	NA	NA	6	+	2521000..2521443	transposon protein, putative, unclassified
LOC_Os06g05580	Os.50550.1.S1_at	11/11	6	+	2528104..2530646	F-box domain containing protein, expressed
LOC_Os06g05590	Os.52010.1.A1_at	11/11	6	+	2531615..2533591	F-box domain containing protein, expressed
LOC_Os06g05590	OsAffx.15275.1.S1_at	10/11	6	+	2531615..2533591	F-box domain containing protein, expressed
LOC_Os06g05600	OsAffx.15276.1.S1_at	11/11	6	+	2534431..2535841	F-box domain containing protein, expressed
LOC_Os06g05610	Os.23589.1.A1_at	11/11	6	+	2536904..2538470	F-box domain containing protein, expressed
LOC_Os06g05620	OsAffx.27465.1.S1_at	11/11	6	+	2541031..2542344	F-box domain containing protein
LOC_Os06g05630	Os.14118.1.S1_at	11/11	6	+	2545953..2548252	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05640	OsAffx.27466.1.S1_at	11/11	6	+	2550070..2553992	hypothetical protein
LOC_Os06g05640	Os.9361.1.S1_at	1/11	6	+	2550070..2553992	hypothetical protein
LOC_Os06g05650	Os.20357.1.S1_at	7/11	6	+	2554517..2555067	NA

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50550.1.S1_at--810--703	1	Chr06:2530463..2530487 (25 bp)	GTAAATGTAATCAGCCCCATTTCAT	LOC_Os06g05580
Os.50550.1.S1_at--1144--705	1	Chr06:2530469..2530493 (25 bp)	GTAATCAGCCCCATTTCATGGCACT	LOC_Os06g05580
Os.50550.1.S1_at--434--19	1	Chr06:2530481..2530505 (25 bp)	ATTTCATGGCACTCTCTGTTGACTG	LOC_Os06g05580
Os.50550.1.S1_at--389--511	1	Chr06:2530489..2530513 (25 bp)	GCACTCTCTGTTGACTGTTTGATTT	LOC_Os06g05580
Os.50550.1.S1_at--321--879	1	Chr06:2530497..2530521 (25 bp)	TGTTGACTGTTTGATTTGGGTTTTC	LOC_Os06g05580
Os.50550.1.S1_at--502--1031	1	Chr06:2530518..2530542 (25 bp)	TTTCTCATTGCACTTGCAACATGTA	LOC_Os06g05580
Os.50550.1.S1_at--674--205	1	Chr06:2530529..2530553 (25 bp)	ACTTGCAACATGTAAACCGGCGGAT	LOC_Os06g05580
Os.50550.1.S1_at--623--373	1	Chr06:2530570..2530594 (25 bp)	CTACTTGTCATGTCTACTCTTATGC	LOC_Os06g05580
Os.50550.1.S1_at--137--713	1	Chr06:2530576..2530600 (25 bp)	GTCATGTCTACTCTTATGCTAGAAT	LOC_Os06g05580
Os.50550.1.S1_at--334--485	1	Chr06:2530593..2530617 (25 bp)	GCTAGAATGATTTGCTCTGGATTCA	LOC_Os06g05580
Os.50550.1.S1_at--981--377	1	Chr06:2530607..2530631 (25 bp)	CTCTGGATTCAGAAAGCATTGAGTT	LOC_Os06g05580

Target Sequence

GTAAATGTAATCAGCCCCATTTCATGGCACTCTCTGTTGACTGTTTGATTTGGGTTTTCTCATTGCACTTGCAACATGTA
AACCGGCGGATGTTGCTTAATATTTTGCTACTTGTCATGTCTACTCTTATGCTAGAATGATTTGCTCTGGATTCAGAAAG
CATTGAGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis