Browse Element(s) Details


Os.23589.1.A1_at

Description gb:AK107542.1
DB_XREF= gi:32992751
TID=Os.23589.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-H10, full insert sequence.
FL= gb:AK107542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0561011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05550Os.5727.1.S1_at10/116+2514767..2516940GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560Os.53045.1.S1_at11/116+2517213..2519939expressed protein
LOC_Os06g05570NANA6+2521000..2521443transposon protein, putative, unclassified
LOC_Os06g05580Os.50550.1.S1_at11/116+2528104..2530646F-box domain containing protein, expressed
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05600OsAffx.15276.1.S1_at11/116+2534431..2535841F-box domain containing protein, expressed
LOC_Os06g05610Os.23589.1.A1_at11/116+2536904..2538470F-box domain containing protein, expressed
LOC_Os06g05620OsAffx.27465.1.S1_at11/116+2541031..2542344F-box domain containing protein
LOC_Os06g05630Os.14118.1.S1_at11/116+2545953..2548252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05640OsAffx.27466.1.S1_at11/116+2550070..2553992hypothetical protein
LOC_Os06g05640Os.9361.1.S1_at1/116+2550070..2553992hypothetical protein
LOC_Os06g05650Os.20357.1.S1_at7/116+2554517..2555067NA
LOC_Os06g05660Os.6238.1.S1_at11/116+2557018..2561217nucleosome/chromatin assembly factor group A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23589.1.A1_at--305--9551Chr06:2537932..2537956 (25 bp)
TCTATCCAAGCGACAGTGGCATTGT
LOC_Os06g05610
Os.23589.1.A1_at--501--10251Chr06:2537982..2538006 (25 bp)
TTTGAAGCCGCAGACCTGAGCAGTG
LOC_Os06g05610
Os.23589.1.A1_at--643--7591Chr06:2538042..2538066 (25 bp)
GGGCATGCTCTCTTTGTTAGCAAGG
LOC_Os06g05610
Os.23589.1.A1_at--707--2851Chr06:2538075..2538099 (25 bp)
AAGTCGCTCAGTGCCGGAGCTGAAG
LOC_Os06g05610
Os.23589.1.A1_at--789--2711Chr06:2538148..2538172 (25 bp)
AAGATCCTTTTTTGGACTCTGGCGT
LOC_Os06g05610
Os.23589.1.A1_at--391--7551Chr06:2538195..2538219 (25 bp)
GTGGCGCCATTGTTGACAGAGACTC
LOC_Os06g05610
Os.23589.1.A1_at--693--10071Chr06:2538220..2538244 (25 bp)
TAGTGGCGGAGCCTCTTGCAGTACA
LOC_Os06g05610
Os.23589.1.A1_at--541--6991Chr06:2538240..2538264 (25 bp)
GTACACGGCGGTCCATGGTGTCCAA
LOC_Os06g05610
Os.23589.1.A1_at--1045--6491Chr06:2538300..2538324 (25 bp)
GATAGTATTCTTGCTTCCAGGTGTT
LOC_Os06g05610
Os.23589.1.A1_at--275--231Chr06:2538325..2538349 (25 bp)
ATATTTACGATTTCTCTTCTTGGCA
LOC_Os06g05610
Os.23589.1.A1_at--418--9571Chr06:2538339..2538363 (25 bp)
TCTTCTTGGCATCTCCTGATAGTAG
LOC_Os06g05610
Target Sequence 
TCTATCCAAGCGACAGTGGCATTGTTAAGCGAACANGGCGGTTCGAAGTCTTTGAAGCCGCAGACCTGAGCAGTGGCTGT
GGAAGGTGGATCAAGGTGGATACATTGATGGGGCATGCTCTCTTTGTTAGCAAGGGCTGCTCCAAGTCGCTCAGTGCCGG
AGCTGAAGAAGACTGCATCTACTTCATGCATGAGGACATCAAGAATGGGAAGCCTGAAGATCCTTTTTTGGACTCTGGCG
TGTACAACATGAGAGACGGGACAGTGGCGCCATTGTTGACAGAGACTCTAGTGGCGGAGCCTCTTGCAGTACACGGCGGT
CCATGGTGTCCAACTTGGCTTTTCCCCTCTGAAACTTGAACTTAGTTGGATAGTATTCTTGCTTCCAGGTGTTATATTTA
CGATTTCTCTTCTTGGCATCTCCTGATAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23589.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis