Browse Element(s) Details


Os.20357.1.S1_at

Description gb:AK121087.1
DB_XREF= gi:37990710
TID=Os.20357.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065F21, full insert sequence.
FL= gb:AK121087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g056507/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05580Os.50550.1.S1_at11/116+2528104..2530646F-box domain containing protein, expressed
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05600OsAffx.15276.1.S1_at11/116+2534431..2535841F-box domain containing protein, expressed
LOC_Os06g05610Os.23589.1.A1_at11/116+2536904..2538470F-box domain containing protein, expressed
LOC_Os06g05620OsAffx.27465.1.S1_at11/116+2541031..2542344F-box domain containing protein
LOC_Os06g05630Os.14118.1.S1_at11/116+2545953..2548252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05640OsAffx.27466.1.S1_at11/116+2550070..2553992hypothetical protein
LOC_Os06g05640Os.9361.1.S1_at1/116+2550070..2553992hypothetical protein
LOC_Os06g05650Os.20357.1.S1_at7/116+2554517..2555067NA
LOC_Os06g05660Os.6238.1.S1_at11/116+2557018..2561217nucleosome/chromatin assembly factor group A, putative, expressed
LOC_Os06g05670Os.54255.1.S1_at10/116+2564187..2566639expressed protein
LOC_Os06g05680Os.45957.4.S1_x_at6/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05680Os.45957.3.S1_x_at2/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05690Os.2260.1.S1_at11/116+2573180..2575677Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os06g05700Os.47826.1.S1_at11/116+2578090..2580721Cysteine synthase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20357.1.S1_at--639--1891Chr06:2556491..2556515 (25 bp)
ACGTTCTACTGGACTTGTGCTGCGA
NONE
Os.20357.1.S1_at--112--6051Chr06:2556463..2556487 (25 bp)
GAGATCTACCAATCTGGGCGTGGAT
NONE
Os.20357.1.S1_at--21--8611Chr06:2556438..2556462 (25 bp)
TGGTCTGTTTCTTCTGGTGACAAAC
NONE
Os.20357.1.S1_at--603--7351Chr06:2556422..2556446 (25 bp)
GTGACAAACCTTAAGCTTGCTCGGA
NONE
Os.20357.1.S1_at--447--5151Chr06:2554908..2554932 (25 bp)
GCAACAGCTGCTGTATCTAGCAAAG
LOC_Os06g05650
Os.20357.1.S1_at--949--7271Chr06:2554842..2554866 (25 bp)
GTGCCTTACTTAGTGGAGAAACCCT
LOC_Os06g05650
Os.20357.1.S1_at--636--5551Chr06:2554825..2554849 (25 bp)
GAAACCCTGTATGGAAATGCCTCTC
LOC_Os06g05650
Os.20357.1.S1_at--78--4471Chr06:2554807..2554831 (25 bp)
GCCTCTCCAGAGCTTAATATTTTTT
LOC_Os06g05650
Os.20357.1.S1_at--580--10371Chr06:2554785..2554809 (25 bp)
TTTTTTCCTGAATTGCACTTCCACC
LOC_Os06g05650
Os.20357.1.S1_at--1126--10671Chr06:2554767..2554791 (25 bp)
TTCCACCATCGCTGAAGAGTTGTAT
LOC_Os06g05650
Os.20357.1.S1_at--236--9771Chr06:2554743..2554767 (25 bp)
TAAGCTAATTGCGACATCTGAAATG
LOC_Os06g05650
Target Sequence 
ACGTTCTACTGGACTTGTGCTGCGAGGGGAGATCTACCAATCTGGGCGTGGATTGGTCTGTTTCTTCTGGTGACAAACCT
TAAGCTTGCTCGGATTTGTTCGGAACAATACCATGGAGGTGAGACCAATGGTTGCTTTGCGTGCTGCCCTAGTTGGTGGG
GTAGCAGCATTTGCGAAGATTGGTGCGGCGATGAAAGCTGCAGGAGGTGCGAAGGTTGGTGCAGCGGCTGCAGCAATGAC
AGCTGCAGCAACAGCTGCTGTATCTAGCAAAGACACAAACAAAGATAATCCGAAGACTGAAACAAAATGATATGTGCCTT
ACTTAGTGGAGAAACCCTGTATGGAAATGCCTCTCCAGAGCTTAATATTTTTTTTTCCTGAATTGCACTTCCACCATCGC
TGAAGAGTTGTATAAGCTAATTGCGACATCTGAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis