Browse Element(s) Details

Os.47826.1.S1_at

Description

gb:AK072457.1
DB_XREF= gi:32982480
TID=Os.47826.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123O18, full insert sequence.
FL= gb:AK072457.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05700	11/11	Cysteine synthase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05640	OsAffx.27466.1.S1_at	11/11	6	+	2550070..2553992	hypothetical protein
LOC_Os06g05640	Os.9361.1.S1_at	1/11	6	+	2550070..2553992	hypothetical protein
LOC_Os06g05650	Os.20357.1.S1_at	7/11	6	+	2554517..2555067	NA
LOC_Os06g05660	Os.6238.1.S1_at	11/11	6	+	2557018..2561217	nucleosome/chromatin assembly factor group A, putative, expressed
LOC_Os06g05670	Os.54255.1.S1_at	10/11	6	+	2564187..2566639	expressed protein
LOC_Os06g05680	Os.45957.4.S1_x_at	6/11	6	+	2567570..2572372	retrotransposon protein, putative, unclassified
LOC_Os06g05680	Os.45957.3.S1_x_at	2/11	6	+	2567570..2572372	retrotransposon protein, putative, unclassified
LOC_Os06g05690	Os.2260.1.S1_at	11/11	6	+	2573180..2575677	Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os06g05700	Os.47826.1.S1_at	11/11	6	+	2578090..2580721	Cysteine synthase, putative, expressed
LOC_Os06g05710	OsAffx.4734.1.S1_at	11/11	6	+	2581783..2582618	pollen-specific protein, putative, expressed
LOC_Os06g05720	Os.35125.1.S1_at	11/11	6	+	2583097..2585157	expressed protein
LOC_Os06g05730	Os.53464.1.S1_at	10/11	6	+	2586931..2587897	expressed protein
LOC_Os06g05740	Os.7225.1.S1_at	10/11	6	+	2588022..2591249	expressed protein
LOC_Os06g05740	OsAffx.27467.1.S1_at	1/11	6	+	2588022..2591249	expressed protein
LOC_Os06g05750	Os.51672.2.S1_at	11/11	6	+	2591770..2593479	Transferase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0019344	biological_process	cysteine biosynthesis
GO:0005739	cellular_component	mitochondrion
GO:0004124	molecular_function	cysteine synthase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47826.1.S1_at--1036--95	1	Chr06:2580107..2580131 (25 bp)	AGGACTCATACCTGATATGTTGGAC	LOC_Os06g05700
Os.47826.1.S1_at--435--27	1	Chr06:2580121..2580145 (25 bp)	ATATGTTGGACACCTCGGTCATCGA	LOC_Os06g05700
Os.47826.1.S1_at--1020--175	1	Chr06:2580132..2580156 (25 bp)	ACCTCGGTCATCGATGAAGTCGTCA	LOC_Os06g05700
Os.47826.1.S1_at--186--533	1	Chr06:2580147..2580171 (25 bp)	GAAGTCGTCACGGTAAACACTGATG	LOC_Os06g05700
Os.47826.1.S1_at--935--535	1	Chr06:2580204..2580228 (25 bp)	GAAGAGGGCCTCCTTATGGGCATTT	LOC_Os06g05700
Os.47826.1.S1_at--740--659	1	Chr06:2580423..2580447 (25 bp)	GATTGTCACCATGTTCCCAAGCGGG	LOC_Os06g05700
Os.47826.1.S1_at--860--619	1	Chr06:2580490..2580514 (25 bp)	GAGGAATGCAATGCCATGACATTTT	LOC_Os06g05700
Os.47826.1.S1_at--908--43	1	Chr06:2580516..2580540 (25 bp)	ATCTCACTGGTTGTTCAGAAGAATC	LOC_Os06g05700
Os.47826.1.S1_at--430--219	1	Chr06:2580590..2580614 (25 bp)	ACACATAGCACGATCTTGCAAAGGG	LOC_Os06g05700
Os.47826.1.S1_at--269--231	1	Chr06:2580609..2580633 (25 bp)	AAAGGGATTTATCGGCAAGGAGCCA	LOC_Os06g05700
Os.47826.1.S1_at--565--559	1	Chr06:2580686..2580710 (25 bp)	GAAATAATTTGCTCACTTCGTGTGA	LOC_Os06g05700

Target Sequence

AGGACTCATACCTGATATGTTGGACACCTCGGTCATCGATGAAGTCGTCACGGTAAACACTGATGAAGCAATGGTGAATG
CAAGGAGGCTGGCAATGGAAGAGGGCCTCCTTATGGGCATTTCTTCTGGGNCAAACCTGGCAGCTTGCTTGAAGNTCGCA
TCGAGAGAGGAAAACAAGGGGAAGATGATTGTCACCATGTTCCCAAGCGGGGGTGAGAGGTACATGAACTCTGACCTCTT
TGCAGCTGTGAGAGAGGAATGCAATGCCATGACATTTTNATCTCACTGGTTGTTCAGAAGAATCAAGAACAGTTATGTGT
AAAACTATAGGAGGGTAACTTGTACCACAATGNACACATAGCACGATCTTGCAAAGGGATTTATCGGCAAGGAGCCAAAG
AATTTGTACGAATTGTATATTTGTNCTAGTCATTAGTCAATAAATAAATGAAATAATTTGCTCACTTCGTGTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis