Browse Element(s) Details


OsAffx.27466.1.S1_at

Description tigr:9634.m00487
TID=OsAffx.27466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0564011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05580Os.50550.1.S1_at11/116+2528104..2530646F-box domain containing protein, expressed
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05600OsAffx.15276.1.S1_at11/116+2534431..2535841F-box domain containing protein, expressed
LOC_Os06g05610Os.23589.1.A1_at11/116+2536904..2538470F-box domain containing protein, expressed
LOC_Os06g05620OsAffx.27465.1.S1_at11/116+2541031..2542344F-box domain containing protein
LOC_Os06g05630Os.14118.1.S1_at11/116+2545953..2548252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05640OsAffx.27466.1.S1_at11/116+2550070..2553992hypothetical protein
LOC_Os06g05640Os.9361.1.S1_at1/116+2550070..2553992hypothetical protein
LOC_Os06g05650Os.20357.1.S1_at7/116+2554517..2555067NA
LOC_Os06g05660Os.6238.1.S1_at11/116+2557018..2561217nucleosome/chromatin assembly factor group A, putative, expressed
LOC_Os06g05670Os.54255.1.S1_at10/116+2564187..2566639expressed protein
LOC_Os06g05680Os.45957.4.S1_x_at6/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05680Os.45957.3.S1_x_at2/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05690Os.2260.1.S1_at11/116+2573180..2575677Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os06g05700Os.47826.1.S1_at11/116+2578090..2580721Cysteine synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27466.1.S1_at--892--6291Chr06:2550636..2550660 (25 bp)
GATGATCGCTGTGTGAAGTTCTGTA
LOC_Os06g05640
OsAffx.27466.1.S1_at--979--1411Chr06:2550580..2550604 (25 bp)
AGAACTATCAGACCTTCCTATACAC
LOC_Os06g05640
OsAffx.27466.1.S1_at--317--4811Chr06:2550517..2550541 (25 bp)
GCTCGTGTCCTCTAGTTTTGTTAAT
LOC_Os06g05640
OsAffx.27466.1.S1_at--1--971Chr06:2550488..2550512 (25 bp)
AGGACTGCGATATGCTTCTGCACTA
LOC_Os06g05640
OsAffx.27466.1.S1_at--396--5111Chr06:2550469..2550493 (25 bp)
GCACTACTCAAGCACTGGACAGGTT
LOC_Os06g05640
OsAffx.27466.1.S1_at--482--6491Chr06:2550396..2550420 (25 bp)
GATAGTTTTTCAGCTAGTTGCAAAG
LOC_Os06g05640
OsAffx.27466.1.S1_at--131--2411Chr06:2550362..2550386 (25 bp)
AAACATGGGCTTCAGCTGGTGCATC
LOC_Os06g05640
OsAffx.27466.1.S1_at--409--8611Chr06:2550346..2550370 (25 bp)
TGGTGCATCTCTCGTCTTCAGGTGG
LOC_Os06g05640
OsAffx.27466.1.S1_at--719--9631Chr06:2550329..2550353 (25 bp)
TCAGGTGGCTTGACCTTATTATCAA
LOC_Os06g05640
OsAffx.27466.1.S1_at--1124--751Chr06:2550303..2550327 (25 bp)
ATGTCTGCAGTGATCTTTGAACGTG
LOC_Os06g05640
OsAffx.27466.1.S1_at--404--4631Chr06:2550269..2550293 (25 bp)
GCGATCATTTTGTCAGTCAACTCAA
LOC_Os06g05640
Target Sequence 
GATGATCGCTGTGTGAAGTTCTGTAGCAAAACTGCTAATAGTCAAGTGCAAGATGAAGAACTATCAGACCTTCCTATACA
CTTTAATTTTCTGCATTTATGGATTCCTTTAGGAATATTGCTCGTGTCCTCTAGTTTTGTTAATGATCAGGACTGCGATA
TGCTTCTGCACTACTCAAGCACTGGACAGGTTCTGGAGTCAAATGAGGTGCAGAGAAAAACAAAAGATCATATCTGTAAT
GATAGTTTTTCAGCTAGTTGCAAAGGTTTTACTGAAACATGGGCTTCAGCTGGTGCATCTCTCGTCTTCAGGTGGCTTGA
CCTTATTATCAATATGTCTGCAGTGATCTTTGAACGTGAAGATATATGCGATCATTTTGTCAGTCAACTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis