Browse Element(s) Details


Os.6238.1.S1_at

Description gb:AK071177.1
DB_XREF= gi:32981200
TID=Os.6238.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.6238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084M16, full insert sequence.
FL= gb:AK071177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0566011/11nucleosome/chromatin assembly factor group A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05600OsAffx.15276.1.S1_at11/116+2534431..2535841F-box domain containing protein, expressed
LOC_Os06g05610Os.23589.1.A1_at11/116+2536904..2538470F-box domain containing protein, expressed
LOC_Os06g05620OsAffx.27465.1.S1_at11/116+2541031..2542344F-box domain containing protein
LOC_Os06g05630Os.14118.1.S1_at11/116+2545953..2548252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05640OsAffx.27466.1.S1_at11/116+2550070..2553992hypothetical protein
LOC_Os06g05640Os.9361.1.S1_at1/116+2550070..2553992hypothetical protein
LOC_Os06g05650Os.20357.1.S1_at7/116+2554517..2555067NA
LOC_Os06g05660Os.6238.1.S1_at11/116+2557018..2561217nucleosome/chromatin assembly factor group A, putative, expressed
LOC_Os06g05670Os.54255.1.S1_at10/116+2564187..2566639expressed protein
LOC_Os06g05680Os.45957.4.S1_x_at6/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05680Os.45957.3.S1_x_at2/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05690Os.2260.1.S1_at11/116+2573180..2575677Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os06g05700Os.47826.1.S1_at11/116+2578090..2580721Cysteine synthase, putative, expressed
LOC_Os06g05710OsAffx.4734.1.S1_at11/116+2581783..2582618pollen-specific protein, putative, expressed
LOC_Os06g05720Os.35125.1.S1_at11/116+2583097..2585157expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6238.1.S1_at--574--8951Chr06:2560337..2560464 (25 bp)
TGACATTGGGACCACCATAAGGGAT
LOC_Os06g05660
Os.6238.1.S1_at--343--3911Chr06:2560488..2560512 (25 bp)
CTGGTTTACTGGTGAGGCTGTGCAA
LOC_Os06g05660
Os.6238.1.S1_at--110--7351Chr06:2560507..2560531 (25 bp)
GTGCAAGCCGAGGATTTTGACGATA
LOC_Os06g05660
Os.6238.1.S1_at--327--1631Chr06:2560748..2560865 (25 bp)
ACCGAAGCTACCATCGAAGGGCGGG
LOC_Os06g05660
Os.6238.1.S1_at--955--9711Chr06:2560883..2560907 (25 bp)
TCAACCAGCAGATTGCAAGCAGCAG
LOC_Os06g05660
Os.6238.1.S1_at--147--3391Chr06:2560926..2560950 (25 bp)
CAGCGCCACGTGAGCTGTTTGTTAT
LOC_Os06g05660
Os.6238.1.S1_at--916--151Chr06:2560965..2560989 (25 bp)
ATTTTGCGTTGAACTGCCCAGGAAA
LOC_Os06g05660
Os.6238.1.S1_at--837--3131Chr06:2560988..2561012 (25 bp)
AATTATTGGTTGGTTGTGCACGGGT
LOC_Os06g05660
Os.6238.1.S1_at--414--3991Chr06:2561040..2561064 (25 bp)
CGTGGTTTTATTGGCGAAGTTGTGA
LOC_Os06g05660
Os.6238.1.S1_at--29--5251Chr06:2561147..2561171 (25 bp)
GAATCTGCCGGTGGAACTTTTACTA
LOC_Os06g05660
Os.6238.1.S1_at--474--3711Chr06:2561169..2561193 (25 bp)
CTAGTATTCATTTGAGCCTTATGGA
LOC_Os06g05660
Target Sequence 
TGACATTGGGACCACCATAAGGGATAAGATCATCCCNACATGCTGTTTCCTGGTTTACTGGTGAGGCTGTGCAAGCCGAG
GATTTTGACGATATGGAGGATGATGAAGAAGATGATGAAGACGATGATGAAGATGAGGAGGAGGAAGAAGAGGATGAGGA
TGAAGACGAAGACGATGAGGAAGAAAAAAGCAAGCCAAAGAAGAAGTCGGCAGGCAAACCGAAGCTACCATCGAAGGGCG
GGGCACAAGGAGGTGCTGATCAACCAGCAGATTGCAAGCAGCAGTAGAACTGTTGTGGTTCACAGCGCCACGTGAGCTGT
TTGTTATTTTGTTGATGCAGTATTTTGCGTTGAACTGCCCAGGAAATTATTGGTTGGTTGTGCACGGGTGAGGTTTCGTT
GCTGGTATATGTTACCCGTGGTTTTATTGGCGAAGTTGTGAGGCCTGTCTGGAACATCTATATTAGAGTATTATTATGTT
TTAGTTATATGTAATCGGTTTATTAAGTTTGTGTAATTATCTGGAATCTGCCGGTGGAACTTTTACTAGTATTCATTTGA
GCCTTATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis