Browse Element(s) Details


OsAffx.27465.1.S1_at

Description tigr:9634.m00484
TID=OsAffx.27465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0562011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05550Os.5727.1.S1_at10/116+2514767..2516940GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560Os.53045.1.S1_at11/116+2517213..2519939expressed protein
LOC_Os06g05570NANA6+2521000..2521443transposon protein, putative, unclassified
LOC_Os06g05580Os.50550.1.S1_at11/116+2528104..2530646F-box domain containing protein, expressed
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05600OsAffx.15276.1.S1_at11/116+2534431..2535841F-box domain containing protein, expressed
LOC_Os06g05610Os.23589.1.A1_at11/116+2536904..2538470F-box domain containing protein, expressed
LOC_Os06g05620OsAffx.27465.1.S1_at11/116+2541031..2542344F-box domain containing protein
LOC_Os06g05630Os.14118.1.S1_at11/116+2545953..2548252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05640OsAffx.27466.1.S1_at11/116+2550070..2553992hypothetical protein
LOC_Os06g05640Os.9361.1.S1_at1/116+2550070..2553992hypothetical protein
LOC_Os06g05650Os.20357.1.S1_at7/116+2554517..2555067NA
LOC_Os06g05660Os.6238.1.S1_at11/116+2557018..2561217nucleosome/chromatin assembly factor group A, putative, expressed
LOC_Os06g05670Os.54255.1.S1_at10/116+2564187..2566639expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27465.1.S1_at--1089--10151Chr06:2541572..2541596 (25 bp)
TATCTGGCATTGCATTCTGTCATGG
LOC_Os06g05620
OsAffx.27465.1.S1_at--264--471Chr06:2541641..2541665 (25 bp)
ATCTCGCTGTTAGTTCTGGTGGCAA
LOC_Os06g05620
OsAffx.27465.1.S1_at--195--3891Chr06:2541656..2541680 (25 bp)
CTGGTGGCAACCGATATTCTTCGAT
LOC_Os06g05620
OsAffx.27465.1.S1_at--212--491Chr06:2541715..2541739 (25 bp)
ATCTGGCCCCAAGACATACCTTTAT
LOC_Os06g05620
OsAffx.27465.1.S1_at--944--6411Chr06:2541844..2541868 (25 bp)
GATCTCTTGGAGACTGCATGCACTT
LOC_Os06g05620
OsAffx.27465.1.S1_at--940--5111Chr06:2541863..2541887 (25 bp)
GCACTTGCTGGTTTGATGTCTTTGA
LOC_Os06g05620
OsAffx.27465.1.S1_at--6--6211Chr06:2541886..2541910 (25 bp)
GAGGCAGACTTCACTGTGCAACCTT
LOC_Os06g05620
OsAffx.27465.1.S1_at--1011--911Chr06:2541922..2541946 (25 bp)
AGGCTCAACACATTGGGCCGCAGAG
LOC_Os06g05620
OsAffx.27465.1.S1_at--234--5051Chr06:2541941..2541965 (25 bp)
GCAGAGCGCTTTTCATTGGCAAATA
LOC_Os06g05620
OsAffx.27465.1.S1_at--312--10231Chr06:2541964..2541988 (25 bp)
TATTGCTCTAAGTCTGTCTCTTCAG
LOC_Os06g05620
OsAffx.27465.1.S1_at--452--371Chr06:2542049..2542073 (25 bp)
ATCAATCTGTTGATCCTCTTCGTGA
LOC_Os06g05620
Target Sequence 
TATCTGGCATTGCATTCTGTCATGGCAAGCTTTATGTTGCTAATCCAGATTTCATGCTATACAAGTTTGATCTCGCTGTT
AGTTCTGGTGGCAACCGATATTCTTCGATGAAAAAAATGACTCTACTTAGGGAAGAATTACAAATCTGGCCCCAAGACAT
ACCTTTATCCAAGGAAGATTACCATATCATCAGGCGATATCTGGTTGAATGTGATGGTAGATTGCTGTTGGTCAGGCGTA
GGATGCAAATACGCCCATTTGCAAAATGTGATGATCTCTTGGAGACTGCATGCACTTGCTGGTTTGATGTCTTTGAGGCA
GACTTCACTGTGCAACCTTGTCAGTGGAGAAGGCTCAACACATTGGGCCGCAGAGCGCTTTTCATTGGCAAATATTGCTC
TAAGTCTGTCTCTTCAGAAGAATGTGAGGAAGTCAAAGAGGACAGCATCTATTTCATGTGTGACTATGTGAAGTCAGATC
AATCTGTTGATCCTCTTCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis