Browse Element(s) Details


Os.5727.1.S1_at

Description gb:AK059204.1
DB_XREF= gi:32969222
TID=Os.5727.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A12, full insert sequence.
FL= gb:AK109420.2 gb:AK059204.1 gb:AK060175.1 gb:AK073593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0555010/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05500NANA6+2483788..2492292transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g05510Os.55293.1.S1_at10/116+2496635..2497203expressed protein
LOC_Os06g05520OsAffx.15273.1.S1_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05520Os.8016.1.S1_a_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05530Os.50965.1.S1_at11/116+2504624..2508041expressed protein
LOC_Os06g05540OsAffx.15274.1.S1_at11/116+2509291..2509872hypothetical protein
LOC_Os06g05550Os.5727.1.S1_at10/116+2514767..2516940GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560Os.53045.1.S1_at11/116+2517213..2519939expressed protein
LOC_Os06g05570NANA6+2521000..2521443transposon protein, putative, unclassified
LOC_Os06g05580Os.50550.1.S1_at11/116+2528104..2530646F-box domain containing protein, expressed
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05600OsAffx.15276.1.S1_at11/116+2534431..2535841F-box domain containing protein, expressed
LOC_Os06g05610Os.23589.1.A1_at11/116+2536904..2538470F-box domain containing protein, expressed
LOC_Os06g05620OsAffx.27465.1.S1_at11/116+2541031..2542344F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5727.1.S1_at--506--8051Chr06:2516352..2516376 (25 bp)
GGAGACGACGGTGCTTCTGTGCAAC
LOC_Os06g05550
Os.5727.1.S1_at--660--6131Chr06:2516482..2516506 (25 bp)
GAGGGCATCAACCTGGTCACATAAA
LOC_Os06g05550
Os.5727.1.S1_at--792--2071Chr06:2516500..2516524 (25 bp)
ACATAAATTCCGGTGGCTTTCAGCC
LOC_Os06g05550
Os.5727.1.S1_at--813--1071Chr06:2516530..2516554 (25 bp)
AGGGCTGCATTGTAGATCGATGACA
LOC_Os06g05550
Os.5727.1.S1_at--939--2431NONE
AACAACACCAGGCTTCAAACTCGAC
NONE
Os.5727.1.S1_at--753--6451Chr06:2516606..2516630 (25 bp)
GATAATAATGTTTGCTCGGTGGTTT
LOC_Os06g05550
Os.5727.1.S1_at--917--8771Chr06:2516672..2516696 (25 bp)
TGTTTCGGGCTGTCGCTGTGTTGCA
LOC_Os06g05550
Os.5727.1.S1_at--798--9051Chr06:2516693..2516717 (25 bp)
TGCATGCCATCAGCCCAGCAATATA
LOC_Os06g05550
Os.5727.1.S1_at--544--7811Chr06:2516771..2516795 (25 bp)
GGTCTTGAAGGTTTCTGTACTTATC
LOC_Os06g05550
Os.5727.1.S1_at--633--5571Chr06:2516810..2516834 (25 bp)
GAAAGTTTTATTGTCTCGTCGTATT
LOC_Os06g05550
Os.5727.1.S1_at--162--2851Chr06:2516897..2516921 (25 bp)
AAGTCTAATACGTTCATCCTTTATA
LOC_Os06g05550
Target Sequence 
GGAGACGACGGTGCTTCTGTGCAACCCCAAGTCGATCGGCACCTGCCCGAACGCGACGACGTACGTGTTCTGGGACGCCG
TCCACCCGTCGGAGGCGGCGAACCAGGTGCTCGCCGACTCCCTCCTCGCCGAGGGCATCAACCTGGTCACATAAATTCCG
GTGGCTTTCAGCCAGCAGAGGGCTGCATTGTAGATCGATGACAAGAACAACACCAGGCTTCAAACTCGACCTGTTTGATT
ATAAATGAGAATAATGATAATAATGTTTGCTCGGTGGTTTGGCANGCGACAGCTCTAAAATGTGTCGATGTGGAGTTGAG
GGTGTTTCGGGCTGTCGCTGTGTTGCATGCCATCAGCCCAGCAATATAGGACGATGTTTTACAGTTTTAAATTTTATACA
CAGCTCGATAAACTGGGAGTAGGTCTTGAAGGTTTCTGTACTTATCATTTTTTTTTGTTTGAAAGTTTTATTGTCTCGTC
GTATTAATATACTCAGATGATTTCAACANNNNNNNNNANANNNAANNNNANTAAATTAAATTGTATAAAGTCTAATACGT
TCATCCTTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis