Browse Element(s) Details


Os.50965.1.S1_at

Description gb:AK059790.1
DB_XREF= gi:32969808
TID=Os.50965.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-E02, full insert sequence.
FL= gb:AK059790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0553011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05490NANA6+2481600..2482289hypothetical protein
LOC_Os06g05500NANA6+2483788..2492292transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g05510Os.55293.1.S1_at10/116+2496635..2497203expressed protein
LOC_Os06g05520OsAffx.15273.1.S1_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05520Os.8016.1.S1_a_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05530Os.50965.1.S1_at11/116+2504624..2508041expressed protein
LOC_Os06g05540OsAffx.15274.1.S1_at11/116+2509291..2509872hypothetical protein
LOC_Os06g05550Os.5727.1.S1_at10/116+2514767..2516940GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560Os.53045.1.S1_at11/116+2517213..2519939expressed protein
LOC_Os06g05570NANA6+2521000..2521443transposon protein, putative, unclassified
LOC_Os06g05580Os.50550.1.S1_at11/116+2528104..2530646F-box domain containing protein, expressed
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50965.1.S1_at--1113--6891Chr06:2506161..2506185 (25 bp)
GTATCCTTCCTACTTAGTGTTCTTA
LOC_Os06g05530
Os.50965.1.S1_at--564--631Chr06:2506137..2506161 (25 bp)
ATGCTCTGTGTTTATATCTCTTTCT
LOC_Os06g05530
Os.50965.1.S1_at--877--9551Chr06:2506115..2506139 (25 bp)
TCTTAGTTTCCTTTCGTGAGCCTTA
LOC_Os06g05530
Os.50965.1.S1_at--1111--7371Chr06:2506100..2506124 (25 bp)
GTGAGCCTTAACTTCCCATGGAAGA
LOC_Os06g05530
Os.50965.1.S1_at--101--8811Chr06:2506073..2506097 (25 bp)
TGTTCCGTCCTTTTGTTGGCTTCAA
LOC_Os06g05530
Os.50965.1.S1_at--474--10871Chr06:2506058..2506082 (25 bp)
TTGGCTTCAAGGACATCAGACTAGT
LOC_Os06g05530
Os.50965.1.S1_at--764--691Chr06:2504865..2504889 (25 bp)
ATGATGATCGGAGACGCCTTACCTT
LOC_Os06g05530
Os.50965.1.S1_at--991--1811Chr06:2504852..2504876 (25 bp)
ACGCCTTACCTTGCACTGATTAGTT
LOC_Os06g05530
Os.50965.1.S1_at--792--151Chr06:2504834..2504858 (25 bp)
ATTAGTTCCTAACTTCCTATCATCC
LOC_Os06g05530
Os.50965.1.S1_at--569--3691Chr06:2504818..2504842 (25 bp)
CTATCATCCTTAGTTAGCTGTGCCC
LOC_Os06g05530
Os.50965.1.S1_at--55--9851Chr06:2504768..2504792 (25 bp)
TAAATCTTGTACCATCTCTGTCCCA
LOC_Os06g05530
Target Sequence 
GTATCCTTCCTACTTAGTGTTCTTATGCTCTGTGTTTATATCTCTTTCTTAGTTTCCTTTCGTGAGCCTTAACTTCCCAT
GGAAGATTTGTTCCGTCCTTTTGTTGGCTTCAAGGACATCAGACTAGTGCATAAGGAGCCAAGACATAGTAGTGATAGGG
CCTATGTTCTATGCTTTGTGGAGTTCAGTGATGCAAAATGTGCAATAACTGCTATGGAGGCTCTCCAAGAATACCGCTTC
GACGAGAGGAAACCCGACGCCGCTGTTCTTAATATCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGA
TGATCGGAGACGCCTTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTGACCTTA
TCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis