Browse Element(s) Details


OsAffx.15275.1.S1_at

Description tigr:9634.m00481
TID=OsAffx.15275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0559010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05530Os.50965.1.S1_at11/116+2504624..2508041expressed protein
LOC_Os06g05540OsAffx.15274.1.S1_at11/116+2509291..2509872hypothetical protein
LOC_Os06g05550Os.5727.1.S1_at10/116+2514767..2516940GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560Os.53045.1.S1_at11/116+2517213..2519939expressed protein
LOC_Os06g05570NANA6+2521000..2521443transposon protein, putative, unclassified
LOC_Os06g05580Os.50550.1.S1_at11/116+2528104..2530646F-box domain containing protein, expressed
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05600OsAffx.15276.1.S1_at11/116+2534431..2535841F-box domain containing protein, expressed
LOC_Os06g05610Os.23589.1.A1_at11/116+2536904..2538470F-box domain containing protein, expressed
LOC_Os06g05620OsAffx.27465.1.S1_at11/116+2541031..2542344F-box domain containing protein
LOC_Os06g05630Os.14118.1.S1_at11/116+2545953..2548252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05640OsAffx.27466.1.S1_at11/116+2550070..2553992hypothetical protein
LOC_Os06g05640Os.9361.1.S1_at1/116+2550070..2553992hypothetical protein
LOC_Os06g05650Os.20357.1.S1_at7/116+2554517..2555067NA
LOC_Os06g05660Os.6238.1.S1_at11/116+2557018..2561217nucleosome/chromatin assembly factor group A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15275.1.S1_at--798--671Chr06:2532886..2532910 (25 bp)
ATGAGAGCCACATAGGTAACCCAAA
LOC_Os06g05590
OsAffx.15275.1.S1_at--328--271Chr06:2532897..2532921 (25 bp)
ATAGGTAACCCAAAGATCTCATCCA
LOC_Os06g05590
OsAffx.15275.1.S1_at--434--2331Chr06:2532908..2532932 (25 bp)
AAAGATCTCATCCATTGAATGCATA
LOC_Os06g05590
OsAffx.15275.1.S1_at--107--9011Chr06:2532923..2532947 (25 bp)
TGAATGCATAATTGACTCCCAGGAT
LOC_Os06g05590
OsAffx.15275.1.S1_at--813--8931Chr06:2532935..2532959 (25 bp)
TGACTCCCAGGATGATTCGACGACT
LOC_Os06g05590
OsAffx.15275.1.S1_at--465--6291Chr06:2532945..2532969 (25 bp)
GATGATTCGACGACTGAACCCCAAT
LOC_Os06g05590
OsAffx.15275.1.S1_at--1116--8971Chr06:2532959..2532983 (25 bp)
TGAACCCCAATCCTTTCCAGAAGAT
LOC_Os06g05590
OsAffx.15275.1.S1_at--81--571Chr06:2532968..2532992 (25 bp)
ATCCTTTCCAGAAGATTATCTCATT
LOC_Os06g05590
OsAffx.15275.1.S1_at--996--3411Chr06:2532976..2533000 (25 bp)
CAGAAGATTATCTCATTATGCGGAG
LOC_Os06g05590
OsAffx.15275.1.S1_at--246--10771NONE
TTGATGGTGACACGAGCCCAACTCC
NONE
OsAffx.15275.1.S1_at--714--6251Chr06:2533034..2533087 (25 bp)
GATGGTGACACGAGCCCAACTCCTT
LOC_Os06g05590
Target Sequence 
ATGAGAGCCACATAGGTAACCCAAAGATCTCATCCATTGAATGCATAATTGACTCCCAGGATGATTCGACGACTGAACCC
CAATCCTTTCCAGAAGATTATCTCATTATGCGGAGGTACTATCTAGTTGAGTCTGGTGGTGGCCTGTTGATGGTGACACG
AGCCCAACTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis