Browse Element(s) Details


OsAffx.15276.1.S1_at

Description tigr:9634.m00482
TID=OsAffx.15276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0560011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05540OsAffx.15274.1.S1_at11/116+2509291..2509872hypothetical protein
LOC_Os06g05550Os.5727.1.S1_at10/116+2514767..2516940GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560Os.53045.1.S1_at11/116+2517213..2519939expressed protein
LOC_Os06g05570NANA6+2521000..2521443transposon protein, putative, unclassified
LOC_Os06g05580Os.50550.1.S1_at11/116+2528104..2530646F-box domain containing protein, expressed
LOC_Os06g05590Os.52010.1.A1_at11/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05590OsAffx.15275.1.S1_at10/116+2531615..2533591F-box domain containing protein, expressed
LOC_Os06g05600OsAffx.15276.1.S1_at11/116+2534431..2535841F-box domain containing protein, expressed
LOC_Os06g05610Os.23589.1.A1_at11/116+2536904..2538470F-box domain containing protein, expressed
LOC_Os06g05620OsAffx.27465.1.S1_at11/116+2541031..2542344F-box domain containing protein
LOC_Os06g05630Os.14118.1.S1_at11/116+2545953..2548252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05640OsAffx.27466.1.S1_at11/116+2550070..2553992hypothetical protein
LOC_Os06g05640Os.9361.1.S1_at1/116+2550070..2553992hypothetical protein
LOC_Os06g05650Os.20357.1.S1_at7/116+2554517..2555067NA
LOC_Os06g05660Os.6238.1.S1_at11/116+2557018..2561217nucleosome/chromatin assembly factor group A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15276.1.S1_at--496--10751Chr06:2535074..2535098 (25 bp)
TTGAAGTCCGCGATGAGGAGCCCAT
LOC_Os06g05600
OsAffx.15276.1.S1_at--719--9051Chr06:2535115..2535139 (25 bp)
TGCATACACAGCACTCCTAGAGATG
LOC_Os06g05600
OsAffx.15276.1.S1_at--630--5351Chr06:2535148..2535172 (25 bp)
GAAGACGAAGCATGGTTCAACCCTC
LOC_Os06g05600
OsAffx.15276.1.S1_at--927--5651Chr06:2535181..2535205 (25 bp)
GACAGGTACACGTTCCATCGATATC
LOC_Os06g05600
OsAffx.15276.1.S1_at--356--9351Chr06:2535209..2535233 (25 bp)
TCGCGGATGGCGATCGGTTGCTCAT
LOC_Os06g05600
OsAffx.15276.1.S1_at--769--7931Chr06:2535245..2535269 (25 bp)
GGATTAATCTTAATCTGCCGCCCAT
LOC_Os06g05600
OsAffx.15276.1.S1_at--1081--8111Chr06:2535296..2535320 (25 bp)
GGACTCGCCGATTTGATGTCTTTGA
LOC_Os06g05600
OsAffx.15276.1.S1_at--762--7591Chr06:2535376..2535400 (25 bp)
GGGCATTCTCTCTTTGTTAGCGAGA
LOC_Os06g05600
OsAffx.15276.1.S1_at--701--6571Chr06:2535474..2535498 (25 bp)
GATTCCTAAGGATCCTCTTTCGGAC
LOC_Os06g05600
OsAffx.15276.1.S1_at--228--7911Chr06:2535528..2535552 (25 bp)
GGTTGCGCCATTGATGCCAGAGACT
LOC_Os06g05600
OsAffx.15276.1.S1_at--296--431Chr06:2535566..2535590 (25 bp)
ATCTTGCTGCACATGACGGTCCATG
LOC_Os06g05600
Target Sequence 
TTGAAGTCCGCGATGAGGAGCCCATGGTGTCTGATGTCAAATGCATACACAGCACTCCTAGAGATGTGGGCGATGAAGAC
GAAGCATGGTTCAACCCTCACTCCACCGACAGGTACACGTTCCATCGATATCTAGTCGCGGATGGCGATCGGTTGCTCAT
GGTGGCACGGTGGATTAATCTTAATCTGCCGCCCATGCTGCCGAGAGATAGCAGCATCAAGCGGACTCGCCGATTTGATG
TCTTTGAGGCGGTGGACCTGAGCAGCGAACATGGACGATGGATAAAAGTTGATACACTGATGGGGCATTCTCTCTTTGTT
AGCGAGAGCTGCTCCGAGTCACTCACTGCCGGAGCTGAAGAAGACTGTATCTACTTCATGAATGATGGCATCATGAATAG
GATTCCTAAGGATCCTCTTTCGGACTCTGGCGTGTACAACATGAGAGATGGGATGGTTGCGCCATTGATGCCAGAGACTG
CAGTGACAGAGCATCTTGCTGCACATGACGGTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis