Browse Element(s) Details


Os.7225.1.S1_at

Description gb:AK067407.1
DB_XREF= gi:32977425
TID=Os.7225.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100C15, full insert sequence.
FL= gb:AK067407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0574010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05670Os.54255.1.S1_at10/116+2564187..2566639expressed protein
LOC_Os06g05680Os.45957.4.S1_x_at6/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05680Os.45957.3.S1_x_at2/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05690Os.2260.1.S1_at11/116+2573180..2575677Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os06g05700Os.47826.1.S1_at11/116+2578090..2580721Cysteine synthase, putative, expressed
LOC_Os06g05710OsAffx.4734.1.S1_at11/116+2581783..2582618pollen-specific protein, putative, expressed
LOC_Os06g05720Os.35125.1.S1_at11/116+2583097..2585157expressed protein
LOC_Os06g05730Os.53464.1.S1_at10/116+2586931..2587897expressed protein
LOC_Os06g05740Os.7225.1.S1_at10/116+2588022..2591249expressed protein
LOC_Os06g05740OsAffx.27467.1.S1_at1/116+2588022..2591249expressed protein
LOC_Os06g05750Os.51672.2.S1_at11/116+2591770..2593479Transferase family protein, expressed
LOC_Os06g05760OsAffx.5303.1.S1_at11/116+2606882..2607796Ubiquitin family protein
LOC_Os06g05770OsAffx.15277.1.S1_at11/116+2611136..2611802hypothetical protein
LOC_Os06g05780NANA6+2614721..2621390retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7225.1.S1_at--412--6171Chr06:2588623..2588647 (25 bp)
GAGGACGATGACTTCCCAAAGAACT
LOC_Os06g05740
Os.7225.1.S1_at--231--2311Chr06:2588430..2588454 (25 bp)
AAAGGCCATGTGAACAAGGTGTCAA
LOC_Os06g05740
Os.7225.1.S1_at--770--5371Chr06:2588377..2588401 (25 bp)
GAAGAAACCTTCAAAATCCAGCAAA
LOC_Os06g05740
Os.7225.1.S1_at--161--2551Chr06:2588353..2588377 (25 bp)
AACTGAACTCTAAATACCACGGAAT
LOC_Os06g05740
Os.7225.1.S1_at--616--1931Chr06:2588335..2588359 (25 bp)
ACGGAATTTCCAGTCCAATTTTGCA
LOC_Os06g05740
Os.7225.1.S1_at--228--4391Chr06:2588321..2588345 (25 bp)
CCAATTTTGCATTCTCCTGGAGATA
LOC_Os06g05740
Os.7225.1.S1_at--1026--4151Chr06:2588208..2588232 (25 bp)
CCAGAAATTTTCAGTGTACACCTAA
LOC_Os06g05740
Os.7225.1.S1_at--814--7031Chr06:2588174..2588198 (25 bp)
GTAACTGGACGAGTTCGGCATGAAT
LOC_Os06g05740
Os.7225.1.S1_at--206--9471Chr06:2588088..2588112 (25 bp)
TCTGTAAAACAACGGCCATACCAGT
LOC_Os06g05740
Os.7225.1.S1_at--515--6291Chr06:2588057..2588081 (25 bp)
GATGATTGGCTGTCTGAAGTTCTGT
LOC_Os06g05740
Os.7225.1.S1_at--1123--111Chr06:2588021..2588045 (25 bp)
ATTAAGGATGCAATCTACCTGTCCA
NONE
Target Sequence 
GAGGACGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGT
TGTGAAGCAGATCAAGGATACAGGCAAAAAGTTAAAAGGCCATGTGAACAAGGTGTCAAAGGTGGTAAAGAAATGGTGGC
AAGGGAAGAAGAAACCTTCAAAATCCAGCAAAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCC
TGGAGATAGATTGATTNTCGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGNACATAAA
CGTGTACAATTTTTTTCCAGAAATTTTCAGTGTACACCTAAACTAGGAAGGTAACTGGACGAGTTCGGCATGAATATTCA
TGAGTCATAGTTTGCAAGTTTAGGAAAAACACCAATTGATTGTTGCTATNCCATACTCTGTAAAACAACGGCCATACCAG
TAAATTAGATGATTGGCTGTCTGAAGTTCTGTTNATCTATTTAATTAAGGATGCAATCTACCTGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis