Browse Element(s) Details


Os.53464.1.S1_at

Description gb:AK072773.1
DB_XREF= gi:32982796
TID=Os.53464.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023138L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138L23, full insert sequence.
FL= gb:AK072773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0573010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05670Os.54255.1.S1_at10/116+2564187..2566639expressed protein
LOC_Os06g05680Os.45957.4.S1_x_at6/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05680Os.45957.3.S1_x_at2/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05690Os.2260.1.S1_at11/116+2573180..2575677Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os06g05700Os.47826.1.S1_at11/116+2578090..2580721Cysteine synthase, putative, expressed
LOC_Os06g05710OsAffx.4734.1.S1_at11/116+2581783..2582618pollen-specific protein, putative, expressed
LOC_Os06g05720Os.35125.1.S1_at11/116+2583097..2585157expressed protein
LOC_Os06g05730Os.53464.1.S1_at10/116+2586931..2587897expressed protein
LOC_Os06g05740Os.7225.1.S1_at10/116+2588022..2591249expressed protein
LOC_Os06g05740OsAffx.27467.1.S1_at1/116+2588022..2591249expressed protein
LOC_Os06g05750Os.51672.2.S1_at11/116+2591770..2593479Transferase family protein, expressed
LOC_Os06g05760OsAffx.5303.1.S1_at11/116+2606882..2607796Ubiquitin family protein
LOC_Os06g05770OsAffx.15277.1.S1_at11/116+2611136..2611802hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53464.1.S1_at--1004--8351Chr06:2587434..2587458 (25 bp)
GGCGGATGTCGATGACCATGAGCCT
LOC_Os06g05730
Os.53464.1.S1_at--780--8711Chr06:2587428..2587452 (25 bp)
TGTCGATGACCATGAGCCTGAGCAA
LOC_Os06g05730
Os.53464.1.S1_at--546--2631Chr06:2587402..2587426 (25 bp)
AACCTGAGCATGAACATCCCGGACA
LOC_Os06g05730
Os.53464.1.S1_at--223--2511Chr06:2587390..2587414 (25 bp)
AACATCCCGGACAAGATGAGGCTGA
LOC_Os06g05730
Os.53464.1.S1_at--842--3771Chr06:2587118..2587142 (25 bp)
CTCGAGCGCCGGGAGTTCTTGACGC
LOC_Os06g05730
Os.53464.1.S1_at--985--2851Chr06:2587065..2587089 (25 bp)
AAGTGACGTGGCAGCCTCGGTATCC
LOC_Os06g05730
Os.53464.1.S1_at--819--5071Chr06:2587055..2587079 (25 bp)
GCAGCCTCGGTATCCGTGTGTATAC
LOC_Os06g05730
Os.53464.1.S1_at--821--251Chr06:2587024..2587048 (25 bp)
ATATGTACGTGTGTATAGGTGGCAG
LOC_Os06g05730
Os.53464.1.S1_at--312--6251Chr06:2586963..2586987 (25 bp)
GATGGTCAAAATGCATTCAGATTCA
LOC_Os06g05730
Os.53464.1.S1_at--234--6571Chr06:2586944..2586968 (25 bp)
GATTCATCAGATATTCAGTTGGTGG
LOC_Os06g05730
Os.53464.1.S1_at--677--9651Chr06:2586931..2586954 (24 bp)
TCAGTTGGTGGTTTCACTCTCTCCC
NONE
Target Sequence 
GGCGGATGTCGATGACCATGAGCCTGAGCAAGAACCTGAGCATGAACATCCCGGACAAGATGAGGCTGAGCCGGCGGGAG
CGGCGGGACAAGGTGGAGCCGGAGGACACGCTGTGGAAGAAGGCCATCATCCTCGGGGAGAAGTGCAAGATCCCCGGCGA
GAGGGAGGGCGAGGCCGACGCCGACGCCGACGACCTCGCCGCCGGCAGCTTCCGCCGCTCGAGCTACTCGCGGCCCATGT
CGCGCTCCATCTCGCTCGCCGTCCACCAATCGCACGTCGACGCTCCTCCGGCCACCACCGCCGCCACCGCCGGCGCCTCG
AGCGCCGGGAGTTCTTGACGCGCTCCCGGGTCCCGGCCCGGCAGAGAGGAAGTGACGTGGCAGCCTCGGTATCCGTGTGT
ATACGTATGTATATGTACGTGTGTATAGGTGGCAGGGTTGTTGCAGGGAGATGCTAGTGTGAATGTGTGATGATGGTCAA
AATGCATTCAGATTCATCAGATATTCAGTTGGTGGTTTCACTCTCTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis