Browse Element(s) Details


OsAffx.15278.1.S1_s_at

Description tigr:9634.m00505
TID=OsAffx.15278.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sybindin-like family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0580011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05770OsAffx.15277.1.S1_at11/116+2611136..2611802hypothetical protein
LOC_Os06g05780NANA6+2614721..2621390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g05790OsAffx.4736.1.S1_at10/116+2630870..2634263Transferase family protein, expressed
LOC_Os06g05800Os.22463.1.S1_at11/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05800OsAffx.15278.1.S1_s_at11/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05800OsAffx.15278.1.S1_at6/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05810NANA6+2645016..2645578hypothetical protein
LOC_Os06g05820Os.9144.1.S1_a_at9/116+2651070..2660303DNA repair protein RadA containing protein, expressed
LOC_Os06g05830Os.47887.2.A1_at11/116+2660305..2662279Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15278.1.S1_s_at--904--91Chr06:2639688..2639712 (25 bp)
ATTCGTTAATCATCAGGCGGCTCTT
LOC_Os06g05800
OsAffx.15278.1.S1_s_at--1121--4811Chr06:2639669..2639693 (25 bp)
GCTCTTTCGGCAATGTCTGCTTTAA
LOC_Os06g05800
OsAffx.15278.1.S1_s_at--996--2291Chr06:2638495..2638515 (21 bp)
AAATGGGACTGTATTTGATCCAGAT
LOC_Os06g05800
OsAffx.15278.1.S1_s_at--890--3431Chr06:2638475..2638499 (25 bp)
CAGATACTGGAGACCGTTTGCACAT
LOC_Os06g05800
OsAffx.15278.1.S1_s_at--324--5831Chr06:2638464..2638488 (25 bp)
GACCGTTTGCACATTGAGCTAGCTA
LOC_Os06g05800
OsAffx.15278.1.S1_s_at--871--5891Chr06:2638449..2638473 (25 bp)
GAGCTAGCTAAATCGAGTTCACGTA
LOC_Os06g05800
OsAffx.15278.1.S1_s_at--244--5571Chr06:2638244..2638268 (25 bp)
GAAAGAGCTGCTGACCATGAGAATG
LOC_Os06g05800
OsAffx.15278.1.S1_s_at--617--1091Chr06:2637415..2637439 (25 bp)
AGTGGTCAACCAGGGCTTAAGCAGC
LOC_Os06g05800
OsAffx.15278.1.S1_s_at--1096--6511Chr06:2636898..2636922 (25 bp)
GATATTCCACCTTGTTCTACTTTAT
LOC_Os06g05800
OsAffx.15278.1.S1_s_at--1110--3291Chr06:2636867..2636891 (25 bp)
CAAATTTGGGTCACTCATGCACAGA
LOC_Os06g05800
OsAffx.15278.1.S1_s_at--508--211Chr06:2636695..2636719 (25 bp)
ATTTGCTTAAAATGCGCCGTCGTGG
LOC_Os06g05800
Target Sequence 
ATTCGTTAATCATCAGGCGGCTCTTTCGGCAATGTCTGCTTTAAATGGGACTGTATTTGATCCAGATACTGGAGACCGTT
TGCACATTGAGCTAGCTAAATCGAGTTCACGTAAACGTCATGGAGATGGTGGGGTTTATAGAGTTGTTGACAAACGACTT
AAGAGAAAAGAAAGAGCTGCTGACCATGAGAATGCTGGTGATGGAGGTAATGATGATGATGCATGGGGCGAGGATGATAA
TGGTGGTAATGATGTGGTTGTCATTGATGACTGGTGCTTCCTTTCGTGCACAGTAGTGGTCAACCAGGGCTTAAGCAGCA
TAGGGGGCAATCTCTTTCAGATTTATTACTTATTAGAACAGGATCAACCAGACAAATTGTCAAGTGATATTCCACCTTGT
TCTACTTTATTTGTTGCAAATTTGGGTCACTCATGCACAGAGGAAGAGCTAAAGGAAGTTTTATCTAAGCAACCTGGATT
TCATTTGCTTAAAATGCGCCGTCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15278.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis