Browse Element(s) Details

Os.9144.1.S1_a_at

Description

gb:AB111516.1
DB_XREF= gi:46091156
GEN=OsRadA
TID=Os.9144.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9144 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRadA mRNA for RadA-like protein, complete cds.
PROD=RadA-like protein
FL= gb:AK102866.1 gb:AB111516.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05820	9/11	DNA repair protein RadA containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05790	OsAffx.4736.1.S1_at	10/11	6	+	2630870..2634263	Transferase family protein, expressed
LOC_Os06g05800	Os.22463.1.S1_at	11/11	6	+	2634909..2640380	RNA recognition motif family protein, expressed
LOC_Os06g05800	OsAffx.15278.1.S1_s_at	11/11	6	+	2634909..2640380	RNA recognition motif family protein, expressed
LOC_Os06g05800	OsAffx.15278.1.S1_at	6/11	6	+	2634909..2640380	RNA recognition motif family protein, expressed
LOC_Os06g05810	NA	NA	6	+	2645016..2645578	hypothetical protein
LOC_Os06g05820	Os.9144.1.S1_a_at	9/11	6	+	2651070..2660303	DNA repair protein RadA containing protein, expressed
LOC_Os06g05830	Os.47887.2.A1_at	11/11	6	+	2660305..2662279	Protein kinase domain containing protein, expressed
LOC_Os06g05840	Os.31312.5.S1_x_at	2/11	6	+	2665546..2668847	retrotransposon protein, putative, unclassified
LOC_Os06g05840	Os.31312.2.S1_x_at	2/11	6	+	2665546..2668847	retrotransposon protein, putative, unclassified
LOC_Os06g05850	NA	NA	6	+	2669476..2675592	retrotransposon protein, putative, unclassified
LOC_Os06g05870	OsAffx.27467.1.S1_at	11/11	6	+	2677431..2687182	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870	Os.7199.1.S1_s_at	11/11	6	+	2677431..2687182	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05860	OsAffx.15279.1.S1_x_at	11/11	6	+	2677979..2682782	Phosphofructokinase family protein, expressed
LOC_Os06g05860	Os.26885.1.A1_at	11/11	6	+	2677979..2682782	Phosphofructokinase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9144.1.S1_a_at--941--299	1	Chr06:2658694..2658718 (25 bp)	AATGTTGTCAGTGGTTTCATGTTGA	LOC_Os06g05820
Os.9144.1.S1_a_at--632--805	1	Chr06:2658730..2658754 (25 bp)	GGAGATCTGGCAATAGCAGCTTCAA	LOC_Os06g05820
Os.9144.1.S1_a_at--894--29	1	NONE	ATAGCAGCTTCAATTTGCAGCAGTT	NONE
Os.9144.1.S1_a_at--236--1085	1	Chr06:2659284..2659308 (25 bp)	TTGGCCTTGGTGGTGAACTTAGAAC	LOC_Os06g05820
Os.9144.1.S1_a_at--525--747	1	NONE	GTGGTGAACTTAGAACTGTGCCAAG	NONE
Os.9144.1.S1_a_at--921--731	1	Chr06:2659872..2659896 (25 bp)	GTGCTAGCTATTGCGAAGTTGGGAT	LOC_Os06g05820
Os.9144.1.S1_a_at--245--343	1	Chr06:2659924..2659948 (25 bp)	CAGAGAAGCTGCTCAGACCGCTGAA	LOC_Os06g05820
Os.9144.1.S1_a_at--340--845	1	Chr06:2660008..2660032 (25 bp)	GGCCACAAGGATGATGCTACACTCT	LOC_Os06g05820
Os.9144.1.S1_a_at--723--1045	1	Chr06:2660065..2660089 (25 bp)	TTAGATCTAGTGTGCCTGGGTCATT	LOC_Os06g05820
Os.9144.1.S1_a_at--117--111	1	Chr06:2660073..2660097 (25 bp)	AGTGTGCCTGGGTCATTGGCCAGAT	LOC_Os06g05820
Os.9144.1.S1_a_at--990--1	1	Chr06:2660087..2660111 (25 bp)	ATTGGCCAGATGCTATGACGATTGA	LOC_Os06g05820

Target Sequence

AATGTTGTCAGTGGTTTCATGTTGACAGAAACTGCAGGAGATCTGGCAATAGCAGCTTCAATTTGCAGCAGTTTCTTAGA
ATATCCTATACCAAATGATATTGCGTTTATCGGAGAGGTTGGCCTTGGTGGTGAACTTAGAACTGTGCCAAGNATGGACA
AGCGGGTGCTAGCTATTGCGAAGTTGGGATACAAGAAATGCGTCGTTCCCAAAACCTCAGAGAAGCTGCTCAGACCGCTG
AACCTTGAACTTGAGATTTTGCCCTGCAGCAACCTGAAAGAGGTCATAAACACCGTATTTAGGCCACAAGGATGATGCTA
CACTCTGCTTACTACTTNCAGTTGCTGACCGTAGGTATTTAGATCTAGTGTGCCTGGGTCATTGGCCAGATGCTATGACG
ATTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis