Browse Element(s) Details


Os.26885.1.A1_at

Description gb:AK058759.1
DB_XREF= gi:32968777
TID=Os.26885.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-001-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B09, full insert sequence.
FL= gb:AK058759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0586011/11Phosphofructokinase family protein, expressed
LOC_Os04g564701/11amino acid transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05820Os.9144.1.S1_a_at9/116+2651070..2660303DNA repair protein RadA containing protein, expressed
LOC_Os06g05830Os.47887.2.A1_at11/116+2660305..2662279Protein kinase domain containing protein, expressed
LOC_Os06g05840Os.31312.5.S1_x_at2/116+2665546..2668847retrotransposon protein, putative, unclassified
LOC_Os06g05840Os.31312.2.S1_x_at2/116+2665546..2668847retrotransposon protein, putative, unclassified
LOC_Os06g05850NANA6+2669476..2675592retrotransposon protein, putative, unclassified
LOC_Os06g05870OsAffx.27467.1.S1_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870Os.7199.1.S1_s_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05860OsAffx.15279.1.S1_x_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05860Os.26885.1.A1_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05880Os.10152.1.S1_at11/116+2689220..2692048Profilin-2, putative, expressed
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0005945cellular_component6-phosphofructokinase complex
GO:0016020cellular_componentmembrane
GO:0003872molecular_function6-phosphofructokinase activity
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26885.1.A1_at--162--8891Chr06:2678319..2678343 (25 bp)
TGAGGCAGAAGGCTACTGATCTATT
LOC_Os06g05860
Os.26885.1.A1_at--537--5291Chr06:2678312..2678336 (25 bp)
GAAGGCTACTGATCTATTATGTGCA
LOC_Os06g05860
Os.26885.1.A1_at--774--7111Chr06:2678262..2678286 (25 bp)
GTCAGTAATCTATCTATGGCTAGTG
LOC_Os06g05860
Os.26885.1.A1_at--899--10091Chr06:2678207..2678231 (25 bp)
TATGGCAAGTGATGCTCAGCTCTTC
LOC_Os06g05860
Os.26885.1.A1_at--337--3731Chr06:2678193..2678217 (25 bp)
CTCAGCTCTTCCTGTCCAAATTAAA
LOC_Os06g05860
Os.26885.1.A1_at--98--3031Chr06:2678169..2678193 (25 bp)
AATGCCGAGAATAGATCTCCTCTAG
LOC_Os06g05860
Os.26885.1.A1_at--696--10031Chr06:2678158..2678182 (25 bp)
TAGATCTCCTCTAGCAGGTTATCGT
LOC_Os06g05860
Os.26885.1.A1_at--721--9911Chr06:2678119..2678143 (25 bp)
TACTGCTGTTTGCTTGCTGTTTATG
LOC_Os06g05860
Os.26885.1.A1_at--163--10091Chr06:2678093..2678117 (25 bp)
TAGGCATCTCTTGGAATGCTATAAT
LOC_Os06g05860
Os.26885.1.A1_at--149--10111Chr06:2678047..2678071 (25 bp)
TATGTCTATATTGCGGTAATGTTCA
LOC_Os06g05860
Os.26885.1.A1_at--270--4652Chr04:33443426..33443658 (25 bp)
GCAGTAAATTATTAACTTGTTCCCG
LOC_Os04g56470
Target Sequence 
TGAGGCAGAAGGCTACTGATCTATTATGTGCAGATGGATTAATTATTNCTCAATAATGTCAGTAATCTATCTATGGCTAG
TGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCTGTCCAAATTAAAATGCCGAGA
ATAGATCTCCTCTAGCAGGTTATCGTNATTATATTTATGTTACTGCTGTTTGCTTGCTGTTTATGNTAGGCATCTCTTGG
AATGCTATAATTTTTTTTCACATCTAATGTGATATGTCTATATTGCGGTAATGTTCAAGAACCATGGAACATTGTTCNAG
ATGTGCAGTAAATTATTAACTTGTTCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26885.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis