Browse Element(s) Details


Os.10152.1.S1_at

Description gb:AK121519.1
DB_XREF= gi:37991142
TID=Os.10152.1
CNT=68
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028A03, full insert sequence.
FL= gb:AK058798.1 gb:AK121519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0588011/11Profilin-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05840Os.31312.5.S1_x_at2/116+2665546..2668847retrotransposon protein, putative, unclassified
LOC_Os06g05840Os.31312.2.S1_x_at2/116+2665546..2668847retrotransposon protein, putative, unclassified
LOC_Os06g05850NANA6+2669476..2675592retrotransposon protein, putative, unclassified
LOC_Os06g05870OsAffx.27467.1.S1_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870Os.7199.1.S1_s_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05860OsAffx.15279.1.S1_x_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05860Os.26885.1.A1_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05880Os.10152.1.S1_at11/116+2689220..2692048Profilin-2, putative, expressed
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05920OsAffx.27468.1.S1_at11/116+2709263..2711459Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os06g05930Os.9093.1.S1_at5/116+2713766..2714068hypothetical protein
LOC_Os06g05940Os.56370.1.S1_at11/116+2716877..2720618expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0008154biological_processactin polymerization and/or depolymerization
GO:0009826biological_processunidimensional cell growth
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0015629cellular_componentactin cytoskeleton
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10152.1.S1_at--638--1951Chr06:2691652..2691676 (25 bp)
ACTGGCCTGTCGTTGATTCTTGGAA
LOC_Os06g05880
Os.10152.1.S1_at--650--151Chr06:2691734..2691758 (25 bp)
ATTATCTGATCGAGCAGGGTTGCTA
LOC_Os06g05880
Os.10152.1.S1_at--656--7671Chr06:2691750..2691774 (25 bp)
GGGTTGCTAAGTCCTCAATATGCTA
LOC_Os06g05880
Os.10152.1.S1_at--469--9771Chr06:2691817..2691841 (25 bp)
TAATGTGAGCTTGCATCTGCTTGCG
LOC_Os06g05880
Os.10152.1.S1_at--830--4971Chr06:2691829..2691853 (25 bp)
GCATCTGCTTGCGTATCACATGATA
LOC_Os06g05880
Os.10152.1.S1_at--523--10471Chr06:2691908..2691932 (25 bp)
TTACCTGTGGTTTATGTTTGGCATC
LOC_Os06g05880
Os.10152.1.S1_at--942--10111Chr06:2691920..2691944 (25 bp)
TATGTTTGGCATCGTGTCGTATCAA
LOC_Os06g05880
Os.10152.1.S1_at--1111--8711Chr06:2691934..2691958 (25 bp)
TGTCGTATCAAACTCAGCTGTCCAT
LOC_Os06g05880
Os.10152.1.S1_at--771--1611Chr06:2691949..2691973 (25 bp)
AGCTGTCCATTCACTGAGTTCTGTA
LOC_Os06g05880
Os.10152.1.S1_at--617--1971Chr06:2691961..2691985 (25 bp)
ACTGAGTTCTGTACATTTACCTGGT
LOC_Os06g05880
Os.10152.1.S1_at--109--4271Chr06:2691993..2692017 (25 bp)
CCTGTGGGTTCTGCTTTATGAAGAT
LOC_Os06g05880
Target Sequence 
ACTGGCCTGTCGTTGATTCTTGGAATCTATGATGAGCCGATGACCCCAGGCCAGTGCAACATGATTGTGGAGAGGCTTGG
CGATTATCTGATCGAGCAGGGTTGCTAAGTCCTCAATATGCTATTTTGGTCATTTGGGACTAAGTTTACTCCCTATTTGG
TTCAGTAATGTGAGCTTGCATCTGCTTGCGTATCACATGATATGGAGTGAATAATTTAGCTCCGGTTTGTTGGTTGGTGA
ACGTGTTGAAAAATATTTACCTGTGGTTTATGTTTGGCATCGTGTCGTATCAAACTCAGCTGTCCATTCACTGAGTTCTG
TACATTTACCTGGTCATGGTACCTGTGGGTTCTGCTTTATGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis