Browse Element(s) Details


Os.9093.1.S1_at

Description gb:CA754677
DB_XREF= gi:25798708
DB_XREF=BR030004000_PLATE_D06_44_048.ab1
CLONE=BR030004000_PLATE_D06_44_048.ab1
TID=Os.9093.1
CNT=27
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.9093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042I21, full insert sequence
FL= gb:AK070204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g059305/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05880Os.10152.1.S1_at11/116+2689220..2692048Profilin-2, putative, expressed
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05920OsAffx.27468.1.S1_at11/116+2709263..2711459Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os06g05930Os.9093.1.S1_at5/116+2713766..2714068hypothetical protein
LOC_Os06g05940Os.56370.1.S1_at11/116+2716877..2720618expressed protein
LOC_Os06g05950Os.27626.1.S1_at11/116+2723130..2725536expressed protein
LOC_Os06g05960NANA6+2731801..2732106hypothetical protein
LOC_Os06g05970OsAffx.25952.1.S1_s_at1/116+2737396..2739453hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9093.1.S1_at--674--5371Chr06:2714063..2714087 (25 bp)
GAAGACATACTGTCCATCCATGGCG
NONE
Os.9093.1.S1_at--805--731Chr06:2713852..2713876 (25 bp)
ATGTAACCGGATGCCGACGCGCGCA
LOC_Os06g05930
Os.9093.1.S1_at--977--4571Chr06:2713832..2713856 (25 bp)
GCGCACGCATGCAGCAATCAGCAAT
LOC_Os06g05930
Os.9093.1.S1_at--901--1451Chr06:2713820..2713844 (25 bp)
AGCAATCAGCAATGCCATCTCGCCT
LOC_Os06g05930
Os.9093.1.S1_at--187--471Chr06:2713804..2713828 (25 bp)
ATCTCGCCTTCATTCTTTTTCATTC
LOC_Os06g05930
Os.9093.1.S1_at--571--8811Chr06:2713772..2713796 (25 bp)
TGTTGTTTTGATTAGCGCCCTTACT
LOC_Os06g05930
Os.9093.1.S1_at--978--1651Chr06:2713759..2713783 (25 bp)
AGCGCCCTTACTTTATGATCATTTG
NONE
Os.9093.1.S1_at--455--6431Chr06:2713743..2713767 (25 bp)
GATCATTTGGTTTAATTTGTACGCT
NONE
Os.9093.1.S1_at--869--211Chr06:2713729..2713753 (25 bp)
ATTTGTACGCTTACCATGAGTTGAT
NONE
Os.9093.1.S1_at--56--10571Chr06:2713692..2713716 (25 bp)
TTCTTCTACCTACGCGTATGTGTCA
NONE
Os.9093.1.S1_at--1096--4291Chr06:2713684..2713708 (25 bp)
CCTACGCGTATGTGTCATGTGGGAT
NONE
Target Sequence 
GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGTGGCGCTGGCGCTTGCCGTGCTCATGTTCACGG
CCACCGCGGTGGCCGGGCACCCGGCTCCGGCGAAGAAGCACGGCCACACGCCGGCGCACCACCACCCGGCGAAGAAGCAC
GGGGCGCGCAAGCACGGCGGCCATGGCGGCCACACCAAGCCTCACCACCGCATGTAACCGGATGCCGACGCGCGCACGCA
TGCAGCAATCAGCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTTAT
GATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGATTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCATGTG
GGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis