Browse Element(s) Details


Os.27626.1.S1_at

Description gb:AK099578.1
DB_XREF= gi:32984787
TID=Os.27626.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013039B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039B21, full insert sequence.
FL= gb:AK099578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0595011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05920OsAffx.27468.1.S1_at11/116+2709263..2711459Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os06g05930Os.9093.1.S1_at5/116+2713766..2714068hypothetical protein
LOC_Os06g05940Os.56370.1.S1_at11/116+2716877..2720618expressed protein
LOC_Os06g05950Os.27626.1.S1_at11/116+2723130..2725536expressed protein
LOC_Os06g05960NANA6+2731801..2732106hypothetical protein
LOC_Os06g05970OsAffx.25952.1.S1_s_at1/116+2737396..2739453hypothetical protein
LOC_Os06g05980Os.27301.1.S1_at11/116+2742657..2748184Solute carrier family 35 member C2, putative, expressed
LOC_Os06g05990OsAffx.10929.1.S1_x_at1/116+2748784..2753800expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27626.1.S1_at--1148--6251Chr06:2723904..2723928 (25 bp)
GATGTGGCCTTATGTTGCAACCAGC
LOC_Os06g05950
Os.27626.1.S1_at--464--3251Chr06:2723892..2723911 (20 bp)
CAACCAGCCCTGCAATTCAGCATAT
LOC_Os06g05950
Os.27626.1.S1_at--142--1551Chr06:2723720..2723744 (25 bp)
AGCATATGCCCTACTTTCGGTGGAA
LOC_Os06g05950
Os.27626.1.S1_at--779--2611Chr06:2723697..2723721 (25 bp)
AAGCCGTCCGGGTTTGTCCATGGAG
LOC_Os06g05950
Os.27626.1.S1_at--225--7271Chr06:2723682..2723706 (25 bp)
GTCCATGGAGTTGATCCATTCGGTG
LOC_Os06g05950
Os.27626.1.S1_at--938--3891Chr06:2723647..2723671 (25 bp)
CTGGTGTTGTTTGTGGCTACTCTCA
LOC_Os06g05950
Os.27626.1.S1_at--624--8411Chr06:2723393..2723417 (25 bp)
GGCCCTGGTTCTCTATTCAGATGAA
LOC_Os06g05950
Os.27626.1.S1_at--994--2051Chr06:2723349..2723373 (25 bp)
ACTTCTGGTTGTTCAGTGTTTTTCT
LOC_Os06g05950
Os.27626.1.S1_at--374--5011Chr06:2723262..2723286 (25 bp)
GCAGGAACCGATTGCTTCTTTGTTG
LOC_Os06g05950
Os.27626.1.S1_at--13--6411Chr06:2723235..2723259 (25 bp)
GATCGGTGGAATGCCAGATCTCCTA
LOC_Os06g05950
Os.27626.1.S1_at--865--571Chr06:2723225..2723249 (25 bp)
ATGCCAGATCTCCTAGCCAAAATTT
LOC_Os06g05950
Target Sequence 
GATGTGGCCTTATGTTGCAACCAGCCCTGCAATTCAGCATATGCCCTACTTTCGGTGGAAGCCGTCCGGGTTTGTCCATG
GAGTTGATCCATTCGGTGAATGAGAATGCTGGTGTTGTTTGTGGCTACTCTCACACTGCTTCTCCTTCTGCCTATGCGTC
TNTATCGATTGGGAGATCAAAGTTGAACGGGAGTGCAGCAAGTTCAGGGTTAGTGTTGAGAGTTGACGCTCCCCTCCANA
GCTTTGGCCGGCCCTGGTTCTCTATTCAGATGAACAGCGGNNTGGAGTTCTGAACTTCTGGTTGTTCAGTGTTTTTCTTC
AAACTGAACAATGCAGAAAGTATTACATTGAAGAAACACTTGTATAGACAGTCAAATGTTGCAGGAACCGATTGCTTCTT
TGTTGGTGATCGGTGGAATGCCAGATCTCCTAGCCAAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis