Browse Element(s) Details


OsAffx.15278.1.S1_at

Description tigr:9634.m00505
TID=OsAffx.15278.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sybindin-like family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g058006/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05770OsAffx.15277.1.S1_at11/116+2611136..2611802hypothetical protein
LOC_Os06g05780NANA6+2614721..2621390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g05790OsAffx.4736.1.S1_at10/116+2630870..2634263Transferase family protein, expressed
LOC_Os06g05800Os.22463.1.S1_at11/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05800OsAffx.15278.1.S1_s_at11/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05800OsAffx.15278.1.S1_at6/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05810NANA6+2645016..2645578hypothetical protein
LOC_Os06g05820Os.9144.1.S1_a_at9/116+2651070..2660303DNA repair protein RadA containing protein, expressed
LOC_Os06g05830Os.47887.2.A1_at11/116+2660305..2662279Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15278.1.S1_at--563--4331Chr06:2640452..2640476 (25 bp)
CCATCTCACGCGGTTGAACGGTTAT
NONE
OsAffx.15278.1.S1_at--575--4071Chr06:2640444..2640468 (25 bp)
CGCGGTTGAACGGTTATCGCAAGGT
NONE
OsAffx.15278.1.S1_at--1113--2571NONE
AACGGTTATCGCAAGGTGGTGGCCT
NONE
OsAffx.15278.1.S1_at--1025--7491Chr09:21665973..21666002 (23 bp)
GTGGTAATGATGTGGTTGTCATTGA
NONE
OsAffx.15278.1.S1_at--513--7131Chr06:2637450..2637474 (25 bp)
GTCATTGATGACTGGTGCTTCCTTT
LOC_Os06g05800
OsAffx.15278.1.S1_at--160--8871Chr06:2637445..2637469 (25 bp)
TGATGACTGGTGCTTCCTTTCGTGC
LOC_Os06g05800
OsAffx.15278.1.S1_at--107--8611Chr06:2637438..2637462 (25 bp)
TGGTGCTTCCTTTCGTGCACAGTAG
LOC_Os06g05800
OsAffx.15278.1.S1_at--676--4911Chr06:2637434..2637458 (25 bp)
GCTTCCTTTCGTGCACAGTAGTGGT
LOC_Os06g05800
OsAffx.15278.1.S1_at--458--10311Chr06:2637428..2637452 (25 bp)
TTTCGTGCACAGTAGTGGTCAACCA
LOC_Os06g05800
OsAffx.15278.1.S1_at--193--7731Chr06:2636937..2637231 (25 bp)
TACTTATTAGAACAGGATCAACCAG
LOC_Os06g05800
OsAffx.15278.1.S1_at--528--151NONE
ATTAGAACAGGATCAACCAGACAAA
NONE
Target Sequence 
CCATCTCACGCGGTTGAACGGTTATCGCAAGGTGGTGGCCTTCGTGTCATTCGTTAATCATCAGGCGGCTCTTTCGGCAA
TGTCTGCTTTAAATGGGACTGTATTTGATCCAGATACTGGAGACCGTTTGCACATTGAGCTAGCTAAATCGAGTTCACGT
AAACGTCATGGAGATGGTGGGGTTTATAGAGTTGTTGACAAACGACTTAAGAGAAAAGAAAGAGCTGCTGACCATGAGAA
TGCTGGTGATGGAGGTAATGATGATGATGCATGGGGCGAGGATGATAATGGTGGTAATGATGTGGTTGTCATTGATGACT
GGTGCTTCCTTTCGTGCACAGTAGTGGTCAACCAGGGCTTAAGCAGCATAGGGGGCAATCTCTTTCAGATTTATTACTTA
TTAGAACAGGATCAACCAGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis