Browse Element(s) Details


OsAffx.4737.1.S1_at

Description tigr:9634.m00523
TID=OsAffx.4737.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0600011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05970OsAffx.25952.1.S1_s_at1/116+2737396..2739453hypothetical protein
LOC_Os06g05980Os.27301.1.S1_at11/116+2742657..2748184Solute carrier family 35 member C2, putative, expressed
LOC_Os06g05990OsAffx.10929.1.S1_x_at1/116+2748784..2753800expressed protein
LOC_Os06g06000OsAffx.4737.1.S1_at11/116+2758259..2761128hypothetical protein
LOC_Os06g06014Os.10264.1.S1_at11/116+2765148..2769430expressed protein
LOC_Os06g06014OsAffx.15280.1.S1_at11/116+2765148..2769430expressed protein
LOC_Os06g06014Os.10264.2.S1_at10/116+2765148..2769430expressed protein
LOC_Os06g06030Os.10995.1.S1_at11/116+2770074..2773038Proteasome subunit beta type 5 precursor, putative, expressed
LOC_Os06g06040Os.46439.1.S1_at11/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06040Os.21058.1.S1_s_at11/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06040OsAffx.15281.1.S1_at9/116+2773438..2778880thiol methyltransferase, putative, expressed
LOC_Os06g06050Os.18946.2.S1_at11/116+2779789..2784227F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06050Os.18946.1.S1_at11/116+2779789..2784227F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06060NANA6+2785775..2789141retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4737.1.S1_at--175--3931Chr06:2760500..2760524 (25 bp)
CGGCGGTTTGCCAGTTCCTGGACAA
LOC_Os06g06000
OsAffx.4737.1.S1_at--401--3951Chr06:2758754..2758778 (25 bp)
CGGACTCGCCCAGCAACAAGAGGAG
LOC_Os06g06000
OsAffx.4737.1.S1_at--641--6111Chr06:2758695..2758719 (25 bp)
GAGTGTTCACGGAGGTCCCGGCCAT
LOC_Os06g06000
OsAffx.4737.1.S1_at--434--1591Chr06:2758650..2758674 (25 bp)
AGCTCGCCGTGATGGTACGCGTGAA
LOC_Os06g06000
OsAffx.4737.1.S1_at--472--7031Chr06:2758616..2758640 (25 bp)
GTACACCAAGCAGACGAGGGCGCCA
LOC_Os06g06000
OsAffx.4737.1.S1_at--217--1091Chr06:2758530..2758554 (25 bp)
AGGGCGCCAAGTTCATCATCCACAA
LOC_Os06g06000
OsAffx.4737.1.S1_at--427--5891Chr06:2758444..2758468 (25 bp)
GAGCTCACTCCCATGACGGAACAAG
LOC_Os06g06000
OsAffx.4737.1.S1_at--107--3251Chr06:2758406..2758430 (25 bp)
CAACGACGCGGTTCAAGCCTTGGAG
LOC_Os06g06000
OsAffx.4737.1.S1_at--914--7491Chr06:2758374..2758398 (25 bp)
GTGGTGTCAAAATAGGCGCAGGCTT
LOC_Os06g06000
OsAffx.4737.1.S1_at--983--4571Chr06:2758359..2758383 (25 bp)
GCGCAGGCTTGAATGTGGCATACCA
LOC_Os06g06000
OsAffx.4737.1.S1_at--103--171Chr06:2758289..2758313 (25 bp)
ATTTTTTATCCGGACTTCTACATCT
LOC_Os06g06000
Target Sequence 
CGGCGGTTTGCCAGTTCCTGGACAAGCCAAGCTCCACGGTCGCCCAAGAACCTGCGGTGACCGGGCGGACGCCGGTGCAC
GCGGCGGACAGCTCCGGACTCGCCCAGCAACAAGAGGAGGCGGTGGCGACGGCAGCTGGGAAGGTGCAGCTGGGAGTGTT
CACGGAGGTCCCGGCCATCTCGTCCCAACGCCGCGAGAAGCTCGCCGTGATGGTACGCGTGAAGGCGCCGGCGTACACCA
AGCAGACGAGGGCGCCACTGGACCTCGTCATGGTGCTGGACATCGGTGGCAGGATGAGGGAGCTGGAGCAGCTGAAGCAG
GGCGCCAAGTTCATCATCCACAACCTCACGCAGCAGGACCGCCTCTCCATCGTCACCTTCGGCCCGAGGGCAGACCGGCT
CTCCGAGCTCACTCCCATGACGGAACAAGACAAGAGGTCGTCCAACGACGCGGTTCAAGCCTTGGAGGCTAGCGGTGGTG
TCAAAATAGGCGCAGGCTTGAATGTGGCATACCAGCGAGAAGTATTTTTTATCCGGACTTCTACATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis