Browse Element(s) Details


Os.32122.1.S1_x_at

Description gb:AK105949.1
DB_XREF= gi:32991158
TID=Os.32122.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU096118(S12194),AU096119(S12194)~similar to Arabidopsis thaliana chromosome 1, At1g10280~unknown protein (P0648C09.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C09, full insert sequence.
FL= gb:AK105949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6549011/11expressed protein
LOC_Os01g042101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65450Os.16536.1.S1_at11/111+38313689..38318627expressed protein
LOC_Os01g65460Os.9892.1.S1_a_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.9892.2.S1_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.42688.1.S1_x_at9/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65470OsAffx.31174.5.S1_x_at11/111+38332742..38333489hypothetical protein
LOC_Os01g65470OsAffx.31174.4.S1_x_at5/111+38332742..38333489hypothetical protein
LOC_Os01g65480Os.8452.1.S1_at11/111+38336490..38339127DnaJ domain containing protein, expressed
LOC_Os01g65490Os.32122.1.S1_x_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.1.S1_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.2.S1_at1/111+38339648..38341148expressed protein
LOC_Os01g65500NANA1+38344981..38348540Chloride channel protein CLC-c, putative
LOC_Os01g65510Os.15941.2.S1_x_at11/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65510OsAffx.15285.1.S1_at1/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65520Os.26261.1.S1_at11/111+38353509..38357030membrane protein, putative, expressed
LOC_Os01g65530Os.16006.1.S1_s_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.10577.1.S1_x_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.16006.1.S1_at11/111+38358347..38362545RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32122.1.S1_x_at--574--2151Chr01:38340221..38340245 (25 bp)
ACAGCTTCGTGGAGGTCTACTACCA
LOC_Os01g65490
Os.32122.1.S1_x_at--646--6151Chr01:38340210..38340234 (25 bp)
GAGGTCTACTACCACAAGGGCAAGA
LOC_Os01g65490
Os.32122.1.S1_x_at--1124--2872Chr01:1854871..1854891 (21 bp)
AAGGGCTCCCAGTGGTTCGAGCTCA
LOC_Os01g04210
Os.32122.1.S1_x_at--661--7371Chr01:38339955..38339979 (25 bp)
GTGACGTACGTCGACTGGTCCAGAG
LOC_Os01g65490
Os.32122.1.S1_x_at--250--1831Chr01:38339892..38339916 (25 bp)
ACGCCGGAGCTGATCCTGAGCATCA
LOC_Os01g65490
Os.32122.1.S1_x_at--355--5891Chr01:38339863..38339887 (25 bp)
GAGCGAGGTGCCCTGCATGTACAAC
LOC_Os01g65490
Os.32122.1.S1_x_at--311--9091Chr01:38339774..38339798 (25 bp)
TGCTCAACATCTCATCGACGGTGAT
LOC_Os01g65490
Os.32122.1.S1_x_at--76--9371Chr01:38339760..38339784 (25 bp)
TCGACGGTGATGCAGTACTAGTTCT
LOC_Os01g65490
Os.32122.1.S1_x_at--716--3791Chr01:38339734..38339758 (25 bp)
CTCGCCGCCAACTATTGTTTGTAAC
LOC_Os01g65490
Os.32122.1.S1_x_at--930--10071Chr01:38339708..38339732 (25 bp)
TAGGATTTCACACAACATATTCAGG
LOC_Os01g65490
Os.32122.1.S1_x_at--555--6971Chr01:38339684..38339708 (25 bp)
GTACCAATTGTACCTGTCAAGCAAA
LOC_Os01g65490
Target Sequence 
ACAGCTTCGTGGAGGTCTACTACCACAAGGGCAAGACGTGCCGCGGCCGGTACAGCCGCCGCATGGAGCCGGACATCACG
CTGCCGCAGTGGAGGAAGGGCTCCCAGTGGTTCGAGCTCAGGCGAGACCTCGCCGTGGCCGCCCTGACGGACGCCAGGTA
CTACCCGCTCTTCCGGCGGCACTGCCGGCCGTCGTGCTACCCCGACGAGCACTACCTCCCGACGTTCGTCGCCATGCTCC
ACGGCGCGGACAACTCGAACCGCACCGTGACGTACGTCGACTGGTCCAGAGGCGGCGCGCACCCGGCGACGTACACCGCC
GGCGACGTCACGCCGGAGCTGATCCTGAGCATCAGGAGGAGCGAGGTGCCCTGCATGTACAACTCCCGGCCGACCACGGC
GTGCTTCCTGTTCGCGAGGAAGTTCTCCGCCGACGCGCTGGAGCCGCTGCTCAACATCTCATCGACGGTGATGCAGTACT
AGTTCTCCTCGCCGCCAACTATTGTTTGTAACATAGGATTTCACACAACATATTCAGGTACCAATTGTACCTGTCAAGCA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32122.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis