Browse Element(s) Details


Os.49042.1.A1_s_at

Description gb:CR293108
DB_XREF= gi:44679674
DB_XREF=CR293108
CLONE=y712d12p3
TID=Os.49042.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.49042 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0962011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09600NANA1+4929300..4935396retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g09610OsAffx.21897.5.S1_x_at4/111+4935713..4938637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g09620Os.49042.1.A1_s_at11/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09620Os.20244.1.S1_at11/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09620Os.37438.1.S1_at1/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09640Os.623.1.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.3.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.1.S1_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.2.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09650OsAffx.10983.1.S1_at1/111+4972893..4973387hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49042.1.A1_s_at--605--8351Chr01:4946221..4946245 (25 bp)
GGCGGCCCTGCCTATTTCAGTGATT
LOC_Os01g09620
Os.49042.1.A1_s_at--221--4711Chr01:4946220..4946244 (25 bp)
GCGGCCCTGCCTATTTCAGTGATTT
LOC_Os01g09620
Os.49042.1.A1_s_at--224--7691Chr01:4946191..4946215 (25 bp)
GGGTTTATCCTCTGTTCATCGTTTG
LOC_Os01g09620
Os.49042.1.A1_s_at--663--10351Chr01:4946188..4946212 (25 bp)
TTTATCCTCTGTTCATCGTTTGTTG
LOC_Os01g09620
Os.49042.1.A1_s_at--410--10151Chr01:4946186..4946210 (25 bp)
TATCCTCTGTTCATCGTTTGTTGCA
LOC_Os01g09620
Os.49042.1.A1_s_at--153--571Chr01:4946185..4946209 (25 bp)
ATCCTCTGTTCATCGTTTGTTGCAT
LOC_Os01g09620
Os.49042.1.A1_s_at--594--4291Chr01:4946183..4946207 (25 bp)
CCTCTGTTCATCGTTTGTTGCATCA
LOC_Os01g09620
Os.49042.1.A1_s_at--389--9471Chr01:4946181..4946205 (25 bp)
TCTGTTCATCGTTTGTTGCATCATC
LOC_Os01g09620
Os.49042.1.A1_s_at--417--8791Chr01:4946179..4946203 (25 bp)
TGTTCATCGTTTGTTGCATCATCGA
LOC_Os01g09620
Os.49042.1.A1_s_at--887--10491Chr01:4946070..4946094 (25 bp)
TTAAGAACCCCCAACAGCATATTTT
LOC_Os01g09620
Os.49042.1.A1_s_at--438--5431Chr01:4946066..4946090 (25 bp)
GAACCCCCAACAGCATATTTTGTAC
LOC_Os01g09620
Target Sequence 
GGCGGCCCTGCCTATTTCAGTGATTTNTGGGGGTTTATCCTCTGTTCATCGTTTGTTGCATCATCGANTAGCTGATGAAG
ATCNTCGATNGATTTCAATCAAGCCCCCCCTCTTGTTGATTTCNNTATTTTGTNGATGTAATCTTTGNTTTGTTAAGAAC
CCCCAACAGCATATTTTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49042.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis