Browse Element(s) Details


OsAffx.14377.1.S1_at

Description tigr:9632.m05083
TID=OsAffx.14377.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5247911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52450Os.14095.1.S1_at11/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450OsAffx.26573.1.S1_x_at10/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.53822.1.S1_x_at1/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52460Os.9644.1.S1_at11/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.48346.1.S1_at10/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.38093.1.S1_at3/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52479Os.47617.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479OsAffx.14377.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.3.S1_x_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.4.S1_x_at4/114+30984708..30995628expressed protein
LOC_Os04g52479Os.49445.1.S1_at2/114+30984708..30995628expressed protein
LOC_Os04g52500Os.16854.1.S1_at11/114+30996071..31000524lecithine cholesterol acyltransferase, putative, expressed
LOC_Os04g52510OsAffx.2198.3.S1_at11/114+31004330..31005478hypothetical protein
LOC_Os04g52520OsAffx.4156.1.S1_at11/114+31006042..31011501hypothetical protein
LOC_Os04g52520Os.54371.1.S1_x_at1/114+31006042..31011501hypothetical protein
LOC_Os04g52530Os.17258.1.S1_at7/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52530OsAffx.23171.1.S1_at3/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52540Os.50333.1.S1_at11/114+31020119..31024364Piwi domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14377.1.S1_at--161--571Chr04:30986431..30986455 (25 bp)
ATCCAACCGGTTGCTTCTGGGTGCA
LOC_Os04g52479
OsAffx.14377.1.S1_at--1108--5031Chr04:30986473..30986497 (25 bp)
GCAGCATACTTCTTATGGCCGACAT
LOC_Os04g52479
OsAffx.14377.1.S1_at--17--5671Chr04:30986493..30986517 (25 bp)
GACATCCAACCTACAGCATTGTGCA
LOC_Os04g52479
OsAffx.14377.1.S1_at--83--1651Chr04:30986517..30986541 (25 bp)
AGCCGAGGGACGTGCAAACTACTTT
LOC_Os04g52479
OsAffx.14377.1.S1_at--334--8591Chr04:30986577..30986601 (25 bp)
TGGTCGGTTGCCCAAAGGTCAGCAA
LOC_Os04g52479
OsAffx.14377.1.S1_at--360--1551Chr04:30986608..30986632 (25 bp)
AGCTTGCTTGACTTGATGACTATAA
LOC_Os04g52479
OsAffx.14377.1.S1_at--947--1251Chr04:30986648..30986672 (25 bp)
AGATATTGCGGCGTTTTAGCCTCGG
LOC_Os04g52479
OsAffx.14377.1.S1_at--594--9991Chr04:30986664..30986688 (25 bp)
TAGCCTCGGGACAGCAGTGGGATTC
LOC_Os04g52479
OsAffx.14377.1.S1_at--195--1271Chr04:30986712..30986736 (25 bp)
AGATATCCCTGCAATCCTTGTCTTT
LOC_Os04g52479
OsAffx.14377.1.S1_at--904--10491Chr04:30986765..30986789 (25 bp)
TTAATCCAGCACAATGTCTTCCTGC
LOC_Os04g52479
OsAffx.14377.1.S1_at--1067--3632Chr04:30992677..30992701 (25 bp)
CTTCCTGCTATTCTTGAGGTGCGGA
LOC_Os04g52479
Target Sequence 
ATCCAACCGGTTGCTTCTGGGTGCACACACACAGAGAACAGCGCAGCATACTTCTTATGGCCGACATCCAACCTACAGCA
TTGTGCAGCCGAGGGACGTGCAAACTACTTTGGAAACCTTCAGAAAGGATTGTTGCCAAGGCACCCTGGTCGGTTGCCCA
AAGGTCAGCAAGCAAATAGCTTGCTTGACTTGATGACTATAAGAGCTTTCCATAGCAAGATATTGCGGCGTTTTAGCCTC
GGGACAGCAGTGGGATTCCGCATCAGGAAAGGGGATCTAACAGATATCCCTGCAATCCTTGTCTTTGTTGCTCGCAAGGT
TCATAAGAAGTGGCTTAATCCAGCACAATGTCTTCCTGCTATTCTTGAGGTGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis