Browse Element(s) Details


OsAffx.28375.1.S1_s_at

Description tigr:9635.m00976
TID=OsAffx.28375.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1012011/11expressed protein
LOC_Os04g524202/11hypothetical protein
LOC_Os07g100301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10090OsAffx.28376.1.S1_at11/117+5404153..5407056hypothetical protein
LOC_Os07g10100NANA7+5409201..5411279retrotransposon protein, putative, unclassified
LOC_Os07g10110Os.20645.1.S1_at10/117+5417068..5424872expressed protein
LOC_Os07g10120OsAffx.28375.1.S1_s_at11/117+5429853..5434447expressed protein
LOC_Os07g10120OsAffx.28375.1.S1_at11/117+5429853..5434447expressed protein
LOC_Os07g10130Os.22578.1.A1_at9/117+5438657..5444128Squalene synthetase, putative, expressed
LOC_Os07g10140NANA7+5448232..5448630hypothetical protein
LOC_Os07g10150Os.7984.1.S1_at11/117+5450473..5457849Coatomer gamma subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28375.1.S1_s_at--951--5432Chr07:5433372..5433396 (25 bp)
GAACCTGAGGAAGATATTAGCCCTA
LOC_Os07g10120
OsAffx.28375.1.S1_s_at--932--2352Chr07:5434094..5434118 (25 bp)
AAAGCTCGCTTAGTGGAACTCTCCA
LOC_Os07g10120
OsAffx.28375.1.S1_s_at--820--8173Chr07:5434108..5434132 (25 bp)
GGAACTCTCCATGTGAATTCGGATG
LOC_Os07g10120
OsAffx.28375.1.S1_s_at--624--7353Chr07:5434120..5434144 (25 bp)
GTGAATTCGGATGAGCTGCAGCATT
LOC_Os07g10120
OsAffx.28375.1.S1_s_at--846--3891Chr07:5434154..5434178 (25 bp)
CTGGGTGCTTCCTGTGCGAAAAGTA
LOC_Os07g10120
OsAffx.28375.1.S1_s_at--640--5331Chr07:5434193..5434217 (25 bp)
GAAGTACTGCTGATTCTGTTGGAAC
LOC_Os07g10120
OsAffx.28375.1.S1_s_at--411--211Chr07:5434232..5434256 (25 bp)
ATTTGCTGCTACTACTACCTAGCTG
LOC_Os07g10120
OsAffx.28375.1.S1_s_at--770--3131Chr07:5434280..5434304 (25 bp)
AATTATGTTACCCAGCAACTCTAGC
LOC_Os07g10120
OsAffx.28375.1.S1_s_at--690--5152Chr07:5434294..5434318 (25 bp)
GCAACTCTAGCTGTTTCTCTAGCTA
LOC_Os07g10120
OsAffx.28375.1.S1_s_at--1118--2352Chr07:5434355..5434379 (25 bp)
AAACCACTCTAAGATGAGCGCACGT
LOC_Os07g10120
OsAffx.28375.1.S1_s_at--173--5892Chr07:5434370..5434394 (25 bp)
GAGCGCACGTGCAGTATGTTTGCTT
LOC_Os07g10120
Target Sequence 
GAACCTGAGGAAGATATTAGCCCTAAAAGGCAACAAACAACTGTGAAGTTTGGTGAAGCAAGTGTGNNNNNNANNNNNNN
NNCTGNNGNNNAGGGTAAAGCTCGCTTAGTGGAACTCTCCATGTGAATTCGGATGAGCTGCAGCATTGGGGCTGTGCTGG
GTGCTTCCTGTGCGAAAAGTAGCTAGACAGTCGATGAAGTACTGCTGATTCTGTTGGAACATTAGGTGGTTTTAATTTGC
TGCTACTACTACCTAGCTGAAGCTTTCATATATCCTAAAAATAATTATGTTACCCAGCAACTCTAGCTGTTTCTCTAGCT
AAGAACTATTCTACTATTAAGTAGACTTGGTCAGAGTAAACCACTCTAAGATGAGCGCACGTGCAGTATGTTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28375.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis