Browse Element(s) Details


OsAffx.28375.1.S1_at

Description tigr:9635.m00976
TID=OsAffx.28375.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1003011/11hypothetical protein
LOC_Os07g1012011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09990OsAffx.17842.1.S1_at4/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09990OsAffx.31892.2.S1_at2/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09990OsAffx.31892.2.S1_x_at1/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g10000OsAffx.28373.1.S1_at11/117+5338209..5339504hypothetical protein
LOC_Os07g10010NANA7+5340865..5343418hypothetical protein
LOC_Os07g10020OsAffx.16186.1.S1_at11/117+5345130..5346712hypothetical protein
LOC_Os07g10030OsAffx.28375.1.S1_at11/117+5347789..5351839hypothetical protein
LOC_Os07g10030OsAffx.28375.1.S1_s_at1/117+5347789..5351839hypothetical protein
LOC_Os07g10040OsAffx.16187.1.S1_at10/117+5352874..5354055retrotransposon protein, putative, unclassified
LOC_Os07g10050NANA7+5368122..5373825retrotransposon protein, putative, unclassified
LOC_Os07g10060NANA7+5374893..5378033retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28375.1.S1_at--591--10092Chr07:5432566..5432590 (25 bp)
TTTGATTGGCACCATGATAAGTCCT
LOC_Os07g10120
OsAffx.28375.1.S1_at--674--6612Chr07:5432569..5432593 (25 bp)
GATTGGCACCATGATAAGTCCTGGA
LOC_Os07g10120
OsAffx.28375.1.S1_at--1114--10852Chr07:5432571..5432595 (25 bp)
TTGGCACCATGATAAGTCCTGGAAA
LOC_Os07g10120
OsAffx.28375.1.S1_at--193--8252Chr07:5432573..5432597 (25 bp)
GGCACCATGATAAGTCCTGGAAAAA
LOC_Os07g10120
OsAffx.28375.1.S1_at--577--2412Chr07:5432595..5432619 (25 bp)
AAAAATCTGGGATCTCATCAGTGAC
LOC_Os07g10120
OsAffx.28375.1.S1_at--558--2272Chr07:5432597..5432621 (25 bp)
AAATCTGGGATCTCATCAGTGACAA
LOC_Os07g10120
OsAffx.28375.1.S1_at--556--5012Chr07:5433279..5433303 (25 bp)
GCAGGCACTGATATGCATTCAAGTC
LOC_Os07g10120
OsAffx.28375.1.S1_at--919--912Chr07:5433281..5433305 (25 bp)
AGGCACTGATATGCATTCAAGTCAA
LOC_Os07g10120
OsAffx.28375.1.S1_at--465--5112Chr07:5433283..5433307 (25 bp)
GCACTGATATGCATTCAAGTCAAGA
LOC_Os07g10120
OsAffx.28375.1.S1_at--1109--3852Chr07:5433286..5433310 (25 bp)
CTGATATGCATTCAAGTCAAGAAGA
LOC_Os07g10120
OsAffx.28375.1.S1_at--917--1412Chr07:5433348..5433372 (25 bp)
AGAAAACATCCAAGGGAAGAAGTGG
LOC_Os07g10120
Target Sequence 
TTTGATTGGCACCATGATAAGTCCTGGAAAAAAATCTGGGATCTCATCAGTGACAAATGCAGGCACTGATATGCATTCAA
GTCAAGAAGATTGCCATACTGAGAATTATTGCCAGGGTTTCACTCCAAGAAAACATCCAAGGGAAGAAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis