Browse Element(s) Details


Os.7984.1.S1_at

Description gb:AK100095.1
DB_XREF= gi:32985304
TID=Os.7984.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full insert sequence.
FL= gb:AK100095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1015011/11Coatomer gamma subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10120OsAffx.28375.1.S1_s_at11/117+5429853..5434447expressed protein
LOC_Os07g10120OsAffx.28375.1.S1_at11/117+5429853..5434447expressed protein
LOC_Os07g10130Os.22578.1.A1_at9/117+5438657..5444128Squalene synthetase, putative, expressed
LOC_Os07g10140NANA7+5448232..5448630hypothetical protein
LOC_Os07g10150Os.7984.1.S1_at11/117+5450473..5457849Coatomer gamma subunit, putative, expressed
LOC_Os07g10160OsAffx.28378.1.S1_at11/117+5461419..5463097UDP-rhamnose:rhamnosyltransferase, putative
LOC_Os07g10160Os.51134.2.S1_x_at1/117+5461419..5463097UDP-rhamnose:rhamnosyltransferase, putative
LOC_Os07g10170OsAffx.5278.1.S1_at10/117+5471891..5473233hypothetical protein
LOC_Os07g10180OsAffx.16189.1.S1_at11/117+5476478..5477071hypothetical protein
LOC_Os07g10190Os.51134.1.S1_at11/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10190Os.51134.2.S1_x_at2/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7984.1.S1_at--580--1131Chr07:5457104..5457128 (25 bp)
AGTGCTGTCATAGGCATCCTTGGCA
LOC_Os07g10150
Os.7984.1.S1_at--179--791Chr07:5457368..5457392 (25 bp)
ATGTGGTCCCAAGCAATTCGAGGTC
LOC_Os07g10150
Os.7984.1.S1_at--525--6151Chr07:5457387..5457411 (25 bp)
GAGGTCACACACTTGCCTGCTATCT
LOC_Os07g10150
Os.7984.1.S1_at--766--4871Chr07:5457405..5457429 (25 bp)
GCTATCTGGTGTGTTTATCGGCAAT
LOC_Os07g10150
Os.7984.1.S1_at--696--1111Chr07:5457441..5457465 (25 bp)
AGTGAGGCTGTCATTCGGACTTAGC
LOC_Os07g10150
Os.7984.1.S1_at--1007--10431Chr07:5457461..5457485 (25 bp)
TTAGCGGACCGAAGGAAGTGGCCAT
LOC_Os07g10150
Os.7984.1.S1_at--761--7551Chr07:5457478..5457502 (25 bp)
GTGGCCATGAAGCTAGCAGTCAGAT
LOC_Os07g10150
Os.7984.1.S1_at--1039--6251Chr07:5457560..5457584 (25 bp)
GATGAAGAGGGTCACCCCTTTTTTG
LOC_Os07g10150
Os.7984.1.S1_at--498--4171Chr07:5457607..5457631 (25 bp)
CGCCATGGAAAGCTCAACGGAATTT
LOC_Os07g10150
Os.7984.1.S1_at--1134--7011Chr07:5457651..5457675 (25 bp)
GTACATGTAAGCTTGGTTTTCCGTT
LOC_Os07g10150
Os.7984.1.S1_at--604--3791Chr07:5457695..5457719 (25 bp)
CTCGCACCCCATCATTTGAAAACAA
LOC_Os07g10150
Target Sequence 
AGTGCTGTCATAGGCATCCTTGGCATGCANCCCTGCGAGGGAACTGATGTGGTCCCAAGCAATTCGAGGTCACACACTTG
CCTGCTATCTGGTGTGTTTATCGGCAATGTGAAAGTTTTAGTGAGGCTGTCATTCGGACTTAGCGGACCGAAGGAAGTGG
CCATGAAGCTAGCAGTCAGATCAGATGATCCTGAGATCAGTGACAAGATCCATGAAATCGTTGCAAATGGCTAAATCTGA
TGAAGAGGGTCACCCCTTTTTTGACCTTTTTGTTTTTGGCTTTCACGCCATGGAAAGCTCAACGGAATTTGATTAATTCT
ATGATGATAGTACATGTAAGCTTGGTTTTCCGTTGGATACATGTGTTGTTGCACTCGCACCCCATCATTTGAAAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis