Browse Element(s) Details


OsAffx.28378.1.S1_at

Description tigr:9635.m00980
TID=OsAffx.28378.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1016011/11UDP-rhamnose:rhamnosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10130Os.22578.1.A1_at9/117+5438657..5444128Squalene synthetase, putative, expressed
LOC_Os07g10140NANA7+5448232..5448630hypothetical protein
LOC_Os07g10150Os.7984.1.S1_at11/117+5450473..5457849Coatomer gamma subunit, putative, expressed
LOC_Os07g10160OsAffx.28378.1.S1_at11/117+5461419..5463097UDP-rhamnose:rhamnosyltransferase, putative
LOC_Os07g10160Os.51134.2.S1_x_at1/117+5461419..5463097UDP-rhamnose:rhamnosyltransferase, putative
LOC_Os07g10170OsAffx.5278.1.S1_at10/117+5471891..5473233hypothetical protein
LOC_Os07g10180OsAffx.16189.1.S1_at11/117+5476478..5477071hypothetical protein
LOC_Os07g10190Os.51134.1.S1_at11/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10190Os.51134.2.S1_x_at2/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10200OsAffx.28377.1.S1_at11/117+5483651..5484775hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_x_at11/117+5488074..5488562hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28378.1.S1_at--17--4411Chr07:5462533..5462557 (25 bp)
GCCACTGACGGTAGGCCACGTGCGC
LOC_Os07g10160
OsAffx.28378.1.S1_at--437--3951Chr07:5462584..5462608 (25 bp)
CGGAGTCCGTTTCCTCTGGGCGCTC
LOC_Os07g10160
OsAffx.28378.1.S1_at--512--9451Chr07:5462621..5462645 (25 bp)
TCGGCGTCGAGCGTAAACCGTGACA
LOC_Os07g10160
OsAffx.28378.1.S1_at--351--9831Chr07:5462634..5462658 (25 bp)
TAAACCGTGACAAATGCGCCGCCGA
LOC_Os07g10160
OsAffx.28378.1.S1_at--29--8671Chr07:5462789..5462813 (25 bp)
TGTGGGTGGAGCTCCATCTTCGAGA
LOC_Os07g10160
OsAffx.28378.1.S1_at--863--9131Chr07:5462817..5462841 (25 bp)
TGCGGTTCGCGCTCCCGCTGGTGAT
LOC_Os07g10160
OsAffx.28378.1.S1_at--870--9331Chr07:5462853..5462877 (25 bp)
TCGCCGACCAGGGACTAGGCGTGCA
LOC_Os07g10160
OsAffx.28378.1.S1_at--422--3191Chr07:5462917..5462941 (25 bp)
CAACGACGACGGATCGTTCCGTAGG
LOC_Os07g10160
OsAffx.28378.1.S1_at--203--5651Chr07:5462928..5462952 (25 bp)
GATCGTTCCGTAGGGACGCCATTGC
LOC_Os07g10160
OsAffx.28378.1.S1_at--1013--1591Chr07:5463015..5463039 (25 bp)
AGCTGCGCGATGTTCTTGGAGACGA
LOC_Os07g10160
OsAffx.28378.1.S1_at--1085--7171Chr07:5463042..5463066 (25 bp)
GTCGGCAGGAGATGTACCTCGATGA
LOC_Os07g10160
Target Sequence 
GCCACTGACGGTAGGCCACGTGCGCGAGCTCGCGCTCGGGCTGGAGCTCGCCGGAGTCCGTTTCCTCTGGGCGCTCCGCG
CGCCGCCGTCGGCGTCGAGCGTAAACCGTGACAAATGCGCCGCCGACGCCGACCTCCTCCTCCCGGACGGGTTCCGGTCG
CGCGTCGCGGCGGCGCGTGGTGGCCTGGTGTGCGCGCGATGGGTGCCGCAGCTGCGCATCCTGGCGCACCGGGCGACGGG
CGGGTTCTTGACGCACTGTGGGTGGAGCTCCATCTTCGAGAGCCTGCGGTTCGCGCTCCCGCTGGTGATGCTGCCGCTCT
TCGCCGACCAGGGACTAGGCGTGCAGGCGTTGCCGGCGAGGGAGATCGGCGTGGAGGTGGCGTGCAACGACGACGGATCG
TTCCGTAGGGACGCCATTGCGGCGGCGGTGCGGCAGGTGATGGTGGAGGAGAAGGGGAAGGCATTGTCGCGCAAGGCCGA
GGAGCTGCGCGATGTTCTTGGAGACGAGGGTCGGCAGGAGATGTACCTCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis