Browse Element(s) Details


OsAffx.28377.1.S1_at

Description tigr:9635.m00984
TID=OsAffx.28377.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1020011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10160OsAffx.28378.1.S1_at11/117+5461419..5463097UDP-rhamnose:rhamnosyltransferase, putative
LOC_Os07g10160Os.51134.2.S1_x_at1/117+5461419..5463097UDP-rhamnose:rhamnosyltransferase, putative
LOC_Os07g10170OsAffx.5278.1.S1_at10/117+5471891..5473233hypothetical protein
LOC_Os07g10180OsAffx.16189.1.S1_at11/117+5476478..5477071hypothetical protein
LOC_Os07g10190Os.51134.1.S1_at11/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10190Os.51134.2.S1_x_at2/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10200OsAffx.28377.1.S1_at11/117+5483651..5484775hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_x_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10220Os.51134.2.S1_x_at2/117+5489010..5489558glycosyltransferase family protein, putative
LOC_Os07g10230OsAffx.28379.1.S1_at11/117+5490306..5491157hydroquinone glucosyltransferase, putative, expressed
LOC_Os07g10240NANA7+5495790..5497289UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g10250Os.25626.1.S1_at11/117+5498540..5504789ATP-dependent RNA helicase An3, putative, expressed
LOC_Os07g10254Os.51539.1.S1_at11/117+5505323..5506008expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28377.1.S1_at--1022--8351Chr07:5484702..5484726 (25 bp)
GGCGGCACCACAGCGAGGATCGACA
LOC_Os07g10200
OsAffx.28377.1.S1_at--336--4491Chr07:5484658..5484682 (25 bp)
GCCGTGCTCAGCTTTCGACAATTGA
LOC_Os07g10200
OsAffx.28377.1.S1_at--1135--9611Chr07:5484617..5484641 (25 bp)
TCATGGAGGGTCAGATCTAGGCTAT
LOC_Os07g10200
OsAffx.28377.1.S1_at--70--7971Chr07:5484586..5484610 (25 bp)
GGATCTAGCGAGTCAGCTTCTGGAT
LOC_Os07g10200
OsAffx.28377.1.S1_at--725--3251Chr07:5484545..5484569 (25 bp)
CAACGGGAGGCCAACGCGAGCTTGT
LOC_Os07g10200
OsAffx.28377.1.S1_at--347--1131Chr07:5483941..5483965 (25 bp)
AGTGCACCAGATGTTATGCTCCTAC
LOC_Os07g10200
OsAffx.28377.1.S1_at--582--10431Chr07:5483928..5483952 (25 bp)
TTATGCTCCTACTTGATGCTGGCCA
LOC_Os07g10200
OsAffx.28377.1.S1_at--494--5491Chr07:5483796..5483820 (25 bp)
GAAAGTCCAGTCTGTTTGGGCCGAC
LOC_Os07g10200
OsAffx.28377.1.S1_at--620--2231Chr07:5483770..5483794 (25 bp)
ACAATGACACTTGTGGGCACCGCAT
LOC_Os07g10200
OsAffx.28377.1.S1_at--822--7591Chr07:5483737..5483761 (25 bp)
GGGCATTCTCGTGGAATCTCTCTCT
LOC_Os07g10200
OsAffx.28377.1.S1_at--1063--5511Chr07:5483689..5483713 (25 bp)
GAAAACCATGTTCTGATCCTCGAGA
LOC_Os07g10200
Target Sequence 
GGCGGCACCACAGCGAGGATCGACAAAGCGACACGGTGGTGGTGGCCGTGCTCAGCTTTCGACAATTGAGGACTGAAACA
ATGGGTCATGGAGGGTCAGATCTAGGCTATGAGGGCGGATCTAGCGAGTCAGCTTCTGGATTTTGCCGGCGGTTGGCCAA
CGGGAGGCCAACGCGAGCTTGTGGATTGCCAACGGGGAGATGCGATCCACTCTTCTCTTTCACCCTCTTCTTTTCCAACC
CAATTACGTGGATGGAGTTGAGTGCACCAGATGTTATGCTCCTACTTGATGCTGGCCAGTGGCGAGGCACTGGTGTGGTG
CACGTTGGCGTGGGAGGGAAGGAAGATTATGGGCGAAAGTCCAGTCTGTTTGGGCCGACAACAATGACACTTGTGGGCAC
CGCATCCCCCTTGGGGCATTCTCGTGGAATCTCTCTCTCCATGATGGATGTCTCTTCAGGTGAAAACCATGTTCTGATCC
TCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis