Browse Element(s) Details


Os.25626.1.S1_at

Description gb:AK101736.1
DB_XREF= gi:32986945
TID=Os.25626.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25626 (NCBI UniGene Cluster)
UG_TITLE=MRNA for DEAD box RNA helicase OsPL10b, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061I19, full insert sequence.
FL= gb:AK101736.1 gb:AK059814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1025011/11ATP-dependent RNA helicase An3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10180OsAffx.16189.1.S1_at11/117+5476478..5477071hypothetical protein
LOC_Os07g10190Os.51134.1.S1_at11/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10190Os.51134.2.S1_x_at2/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10200OsAffx.28377.1.S1_at11/117+5483651..5484775hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_x_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10220Os.51134.2.S1_x_at2/117+5489010..5489558glycosyltransferase family protein, putative
LOC_Os07g10230OsAffx.28379.1.S1_at11/117+5490306..5491157hydroquinone glucosyltransferase, putative, expressed
LOC_Os07g10240NANA7+5495790..5497289UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g10250Os.25626.1.S1_at11/117+5498540..5504789ATP-dependent RNA helicase An3, putative, expressed
LOC_Os07g10254Os.51539.1.S1_at11/117+5505323..5506008expressed protein
LOC_Os07g10260NANA7+5509781..5510035hypothetical protein
LOC_Os07g10270OsAffx.6537.1.S1_at1/117+5511800..5513220hypothetical protein
LOC_Os07g10280NANA7+5513866..5514120hypothetical protein
LOC_Os07g10290OsAffx.23890.3.A1_at2/117+5517853..5518641hypothetical protein
LOC_Os07g10290OsAffx.26617.4.S1_x_at1/117+5517853..5518641hypothetical protein
LOC_Os07g10300Os.10383.1.S1_at11/117+5519909..5524998expressed protein
LOC_Os07g10310OsAffx.28381.1.S1_at11/117+5526553..5527383hypothetical protein
LOC_Os07g10310OsAffx.28385.2.S1_x_at1/117+5526553..5527383hypothetical protein
LOC_Os07g10320OsAffx.28382.1.S1_at11/117+5528953..5529402hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25626.1.S1_at--297--8131Chr07:5499086..5499110 (25 bp)
GGACTTCCGACGAGACAGAGGCAGT
LOC_Os07g10250
Os.25626.1.S1_at--800--1111Chr07:5498941..5498965 (25 bp)
AGTGCTTGGGACTGATCCTGATCCA
LOC_Os07g10250
Os.25626.1.S1_at--799--5531Chr07:5498892..5498916 (25 bp)
GAAACAATCGTGCTCTATTGGCCTC
LOC_Os07g10250
Os.25626.1.S1_at--443--8451Chr07:5498874..5498898 (25 bp)
TGGCCTCCCTTTGGTGACATGGAAA
LOC_Os07g10250
Os.25626.1.S1_at--1073--6491Chr07:5498824..5498848 (25 bp)
GATAGTATGGTGTGGCATCGCCTTC
LOC_Os07g10250
Os.25626.1.S1_at--471--431Chr07:5498799..5498823 (25 bp)
ATCATTGGCGGTTCTCTCAGTCTGG
LOC_Os07g10250
Os.25626.1.S1_at--38--3751Chr07:5498784..5498808 (25 bp)
CTCAGTCTGGTGTTGATTTTTCCTT
LOC_Os07g10250
Os.25626.1.S1_at--96--10211Chr07:5498682..5498706 (25 bp)
TATTAATTTCTCCTTTCTACTGTTT
LOC_Os07g10250
Os.25626.1.S1_at--717--9531Chr07:5498667..5498691 (25 bp)
TCTACTGTTTCATTTCGCATCGATG
LOC_Os07g10250
Os.25626.1.S1_at--260--3551Chr07:5498650..5498674 (25 bp)
CATCGATGCTTTACTGCCTGTGTAT
LOC_Os07g10250
Os.25626.1.S1_at--935--10191Chr07:5498622..5498646 (25 bp)
TATTTACCTCTTTCATATCCACTGG
LOC_Os07g10250
Target Sequence 
GGACTTCCGACGAGACAGAGGCAGTGGTGGTGGAGGGTATGGTGGTGGAGGTGGAGGTTATGGAGGTGGCGGATATGGTG
GTGGTGGCGGTGGAGGCGGCTATGGTGGCGGTAGCAGCTACGGAGGTGGCGGGCAAGGTTTTTCTAGTGCTTGGGACTGA
TCCTGATCCAGAGCTGTCATGAGAACTGAAATTTGAAACAATCGTGCTCTATTGGCCTCCCTTTGGTGACATGGAAATTT
GAAATTTGAGTTNCCTTTTGATGATAGTATGGTGTGGCATCGCCTTCATCATTGGCGGTTCTCTCAGTCTGGTGTTGATT
TTTCCTTTTTTGTGTACTGTACTAGGGATTGCTTGTGTTTTTTTATCTGCGAATTGTGAACTCATCTTTTAATGGGGCCT
CTTTTATTAATTTCTCCTTTCTACTGTTTCATTTCGCATCGATGCTTTACTGCCTGTGTATGTTTATTTACCTCTTTCAT
ATCCACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis