Browse Element(s) Details


OsAffx.28381.1.S1_at

Description tigr:9635.m00998
TID=OsAffx.28381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1031011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10250Os.25626.1.S1_at11/117+5498540..5504789ATP-dependent RNA helicase An3, putative, expressed
LOC_Os07g10254Os.51539.1.S1_at11/117+5505323..5506008expressed protein
LOC_Os07g10260NANA7+5509781..5510035hypothetical protein
LOC_Os07g10270OsAffx.6537.1.S1_at1/117+5511800..5513220hypothetical protein
LOC_Os07g10280NANA7+5513866..5514120hypothetical protein
LOC_Os07g10290OsAffx.23890.3.A1_at2/117+5517853..5518641hypothetical protein
LOC_Os07g10290OsAffx.26617.4.S1_x_at1/117+5517853..5518641hypothetical protein
LOC_Os07g10300Os.10383.1.S1_at11/117+5519909..5524998expressed protein
LOC_Os07g10310OsAffx.28381.1.S1_at11/117+5526553..5527383hypothetical protein
LOC_Os07g10310OsAffx.28385.2.S1_x_at1/117+5526553..5527383hypothetical protein
LOC_Os07g10320OsAffx.28382.1.S1_at11/117+5528953..5529402hypothetical protein
LOC_Os07g10330OsAffx.28385.2.S1_x_at3/117+5533026..5533661hypothetical protein
LOC_Os07g10340OsAffx.28384.1.S1_at11/117+5535262..5535480hypothetical protein
LOC_Os07g10350OsAffx.5279.1.S1_at11/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10350OsAffx.5279.1.S1_x_at11/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10350Os.48189.1.S1_at9/117+5550354..5555435S1 RNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28381.1.S1_at--1151--7751Chr07:5526936..5526960 (25 bp)
GGTGAGGTGGACTACGTCGTCGAGC
LOC_Os07g10310
OsAffx.28381.1.S1_at--259--5071Chr07:5526884..5526908 (25 bp)
GCAGCTTCGACGACCTTGTGTCAGA
LOC_Os07g10310
OsAffx.28381.1.S1_at--801--9351Chr07:5526878..5526902 (25 bp)
TCGACGACCTTGTGTCAGACGCCGA
LOC_Os07g10310
OsAffx.28381.1.S1_at--815--5831Chr07:5526873..5526897 (25 bp)
GACCTTGTGTCAGACGCCGACGTGG
LOC_Os07g10310
OsAffx.28381.1.S1_at--434--3931Chr07:5526829..5526853 (25 bp)
CGGCTTCGACGACCTTGTGGCCGAA
LOC_Os07g10310
OsAffx.28381.1.S1_at--468--9351Chr07:5526824..5526848 (25 bp)
TCGACGACCTTGTGGCCGAAGCCGA
LOC_Os07g10310
OsAffx.28381.1.S1_at--1087--1731Chr07:5526818..5526842 (25 bp)
ACCTTGTGGCCGAAGCCGATGACGA
LOC_Os07g10310
OsAffx.28381.1.S1_at--905--4231Chr07:5526713..5526737 (25 bp)
CCGTGAGTCTCTTGGGCGTCGACTA
LOC_Os07g10310
OsAffx.28381.1.S1_at--737--1151Chr07:5526708..5526732 (25 bp)
AGTCTCTTGGGCGTCGACTACGACA
LOC_Os07g10310
OsAffx.28381.1.S1_at--1043--3251Chr07:5526679..5526703 (25 bp)
CAACGATATCGTCCGCAAACACCTG
LOC_Os07g10310
OsAffx.28381.1.S1_at--55--2411Chr07:5526663..5526687 (25 bp)
AAACACCTGGCGGAGAAGAATCGGC
LOC_Os07g10310
Target Sequence 
GGTGAGGTGGACTACGTCGTCGAGCACTTCGAGGACGACGATAACGGCGGCGGCAGCTTCGACGACCTTGTGTCAGACGC
CGACGTGGCGGACGACGGCGGCGGCGGCGGCTTCGACGACCTTGTGGCCGAAGCCGATGACGAGGCCGCCACCACCCCGG
CGGCGGCGGCGGCGGACGACGCGAGGGCGCCGCGCACCACCGCCAGGATGAGCGTGAGGCGGCCCGTGAGTCTCTTGGGC
GTCGACTACGACACCATCAACGATATCGTCCGCAAACACCTGGCGGAGAAGAATCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis