Browse Element(s) Details


OsAffx.23890.3.A1_at

Description tigr:9635.m00996
TID=OsAffx.23890.3
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g102902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10240NANA7+5495790..5497289UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g10250Os.25626.1.S1_at11/117+5498540..5504789ATP-dependent RNA helicase An3, putative, expressed
LOC_Os07g10254Os.51539.1.S1_at11/117+5505323..5506008expressed protein
LOC_Os07g10260NANA7+5509781..5510035hypothetical protein
LOC_Os07g10270OsAffx.6537.1.S1_at1/117+5511800..5513220hypothetical protein
LOC_Os07g10280NANA7+5513866..5514120hypothetical protein
LOC_Os07g10290OsAffx.23890.3.A1_at2/117+5517853..5518641hypothetical protein
LOC_Os07g10290OsAffx.26617.4.S1_x_at1/117+5517853..5518641hypothetical protein
LOC_Os07g10300Os.10383.1.S1_at11/117+5519909..5524998expressed protein
LOC_Os07g10310OsAffx.28381.1.S1_at11/117+5526553..5527383hypothetical protein
LOC_Os07g10310OsAffx.28385.2.S1_x_at1/117+5526553..5527383hypothetical protein
LOC_Os07g10320OsAffx.28382.1.S1_at11/117+5528953..5529402hypothetical protein
LOC_Os07g10330OsAffx.28385.2.S1_x_at3/117+5533026..5533661hypothetical protein
LOC_Os07g10340OsAffx.28384.1.S1_at11/117+5535262..5535480hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23890.3.A1_at--516--1393Chr05:23488024..23488048 (25 bp)
AGCTTGGCGGGCAGGGACTCGACGA
NONE
OsAffx.23890.3.A1_at--1137--5073Chr05:23488100..23488124 (25 bp)
GCACCGCGGCGATGTCCTGGACGAC
NONE
OsAffx.23890.3.A1_at--878--4276Chr08:24435890..24435913 (24 bp)
CCTAAAGACGGTGTGAAACTGACAT
NONE
OsAffx.23890.3.A1_at--1101--2251Chr05:23488749..23488773 (25 bp)
AAATCAAAACCCTCTGTCGAAGCAA
NONE
OsAffx.23890.3.A1_at--183--2351Chr05:23488755..23488779 (25 bp)
AAACCCTCTGTCGAAGCAACGTTCG
NONE
OsAffx.23890.3.A1_at--276--1491Chr05:23488769..23488793 (25 bp)
AGCAACGTTCGTATCAGGATCACAA
NONE
OsAffx.23890.3.A1_at--505--6891Chr05:23488779..23488803 (25 bp)
GTATCAGGATCACAACAAATGCTAA
NONE
OsAffx.23890.3.A1_at--382--1011Chr05:23488872..23488896 (25 bp)
AGGATTGTCACAGAAAAGCCAAACT
NONE
OsAffx.23890.3.A1_at--610--2651Chr05:23488887..23488911 (25 bp)
AAGCCAAACTGGGTGGCCATTGGGA
NONE
OsAffx.23890.3.A1_at--478--7631Chr05:23488908..23488932 (25 bp)
GGGACGGGCCGTCCAGCATTAAATC
NONE
OsAffx.23890.3.A1_at--100--3391Chr05:23488921..23488945 (25 bp)
CAGCATTAAATCCTGCGGTGGTTTC
NONE
Target Sequence 
AGCTTGGCGGGCAGGGACTCGACGAGGAGGACGAGGTCGTCGGCCCTGCCGAGGACGCGCTCGGTGGCCGGGAAGAGCAC
CGCGGCGATGTCCTGGACGACGAGGAGCTGCCTGTCCGTGAAGNCCAGCGTGGGGCCCACCAGATGTNCCCTAAAGACGG
TGTGAAACTGACATGTGGGACCCACGTGGGCCCCACCTTTTTTATAATTCCTGCCCAAATCAAAACCCTCTGTCGAAGCA
ACGTTCGTATCAGGATCACAACAAATGCTAAACAGATCAAACTTGGCAAGAGAAACAGCAAGATAGATCTGAAGTTTTAA
AAAAAATGGAATGATAGATAGGATTGTCACAGAAAAGCCAAACTGGGTGGCCATTGGGACGGGCCGTCCAGCATTAAATC
CTGCGGTGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23890.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis