Browse Element(s) Details


OsAffx.28384.1.S1_at

Description tigr:9635.m01001
TID=OsAffx.28384.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1034011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10270OsAffx.6537.1.S1_at1/117+5511800..5513220hypothetical protein
LOC_Os07g10280NANA7+5513866..5514120hypothetical protein
LOC_Os07g10290OsAffx.23890.3.A1_at2/117+5517853..5518641hypothetical protein
LOC_Os07g10290OsAffx.26617.4.S1_x_at1/117+5517853..5518641hypothetical protein
LOC_Os07g10300Os.10383.1.S1_at11/117+5519909..5524998expressed protein
LOC_Os07g10310OsAffx.28381.1.S1_at11/117+5526553..5527383hypothetical protein
LOC_Os07g10310OsAffx.28385.2.S1_x_at1/117+5526553..5527383hypothetical protein
LOC_Os07g10320OsAffx.28382.1.S1_at11/117+5528953..5529402hypothetical protein
LOC_Os07g10330OsAffx.28385.2.S1_x_at3/117+5533026..5533661hypothetical protein
LOC_Os07g10340OsAffx.28384.1.S1_at11/117+5535262..5535480hypothetical protein
LOC_Os07g10350OsAffx.5279.1.S1_at11/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10350OsAffx.5279.1.S1_x_at11/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10350Os.48189.1.S1_at9/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10360OsAffx.28385.2.S1_x_at1/117+5557080..5557649hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28384.1.S1_at--1147--3771Chr07:5535426..5535450 (25 bp)
CTCGGCATCCGTGAAGGCAGAGTCA
LOC_Os07g10340
OsAffx.28384.1.S1_at--489--551Chr07:5535420..5535444 (25 bp)
ATCCGTGAAGGCAGAGTCACCGACG
LOC_Os07g10340
OsAffx.28384.1.S1_at--24--5311Chr07:5535414..5535438 (25 bp)
GAAGGCAGAGTCACCGACGGCGCCA
LOC_Os07g10340
OsAffx.28384.1.S1_at--83--4671Chr07:5535359..5535383 (25 bp)
GCGTGAAGCCGATGAGCCTCGGCAT
LOC_Os07g10340
OsAffx.28384.1.S1_at--709--1671Chr07:5535353..5535377 (25 bp)
AGCCGATGAGCCTCGGCATCGACTA
LOC_Os07g10340
OsAffx.28384.1.S1_at--181--531Chr07:5535336..5535360 (25 bp)
ATCGACTACACCATTCTCGAACAAG
LOC_Os07g10340
OsAffx.28384.1.S1_at--931--5691Chr07:5535333..5535357 (25 bp)
GACTACACCATTCTCGAACAAGCTG
LOC_Os07g10340
OsAffx.28384.1.S1_at--131--2171Chr07:5535329..5535353 (25 bp)
ACACCATTCTCGAACAAGCTGATCC
LOC_Os07g10340
OsAffx.28384.1.S1_at--818--91Chr07:5535324..5535348 (25 bp)
ATTCTCGAACAAGCTGATCCGCAAA
LOC_Os07g10340
OsAffx.28384.1.S1_at--560--2691Chr07:5535314..5535338 (25 bp)
AAGCTGATCCGCAAACACGTCGAGG
LOC_Os07g10340
OsAffx.28384.1.S1_at--855--6171Chr07:5535293..5535317 (25 bp)
GAGGAGCTGCGGCAACGGGCGCGGT
LOC_Os07g10340
Target Sequence 
CTCGGCATCCGTGAAGGCAGAGTCACCGACGGCGCCACAAGCAGGAGGACAATGAATGCCAGGATGAGCGTGAAGCCGAT
GAGCCTCGGCATCGACTACACCATTCTCGAACAAGCTGATCCGCAAACACGTCGAGGAGCTGCGGCAACGGGCGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis