Browse Element(s) Details


Os.48189.1.S1_at

Description gb:AK103882.1
DB_XREF= gi:32989091
TID=Os.48189.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033149P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149P22, full insert sequence.
FL= gb:AK103882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g103509/11S1 RNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10310OsAffx.28381.1.S1_at11/117+5526553..5527383hypothetical protein
LOC_Os07g10310OsAffx.28385.2.S1_x_at1/117+5526553..5527383hypothetical protein
LOC_Os07g10320OsAffx.28382.1.S1_at11/117+5528953..5529402hypothetical protein
LOC_Os07g10330OsAffx.28385.2.S1_x_at3/117+5533026..5533661hypothetical protein
LOC_Os07g10340OsAffx.28384.1.S1_at11/117+5535262..5535480hypothetical protein
LOC_Os07g10350OsAffx.5279.1.S1_at11/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10350OsAffx.5279.1.S1_x_at11/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10350Os.48189.1.S1_at9/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10360OsAffx.28385.2.S1_x_at1/117+5557080..5557649hypothetical protein
LOC_Os07g10370OsAffx.28385.2.S1_x_at11/117+5563788..5564315hypothetical protein
LOC_Os07g10380OsAffx.28386.1.S1_at11/117+5564976..5565440hypothetical protein
LOC_Os07g10390Os.18616.1.S1_at11/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10390OsAffx.12779.1.S1_at1/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48189.1.S1_at--1108--9411Chr07:5555110..5555134 (25 bp)
TCGTGGCTGCAGAAATTGCGATCAG
LOC_Os07g10350
Os.48189.1.S1_at--354--10711Chr07:5555125..5555149 (25 bp)
TTGCGATCAGCAACCTGATGCGACG
LOC_Os07g10350
Os.48189.1.S1_at--718--8851Chr07:5555140..5555164 (25 bp)
TGATGCGACGACTCCTGATAGGTTT
LOC_Os07g10350
Os.48189.1.S1_at--328--3871Chr07:5555154..5555178 (25 bp)
CTGATAGGTTTCTGCGAGGATCGGC
LOC_Os07g10350
Os.48189.1.S1_at--167--7971Chr07:5555171..5555195 (25 bp)
GGATCGGCGGTGTAACTGTCTGAAT
LOC_Os07g10350
Os.48189.1.S1_at--567--7831Chr07:5555203..5555227 (25 bp)
GGTCAAGTCCTTGGTCGATGCAGAA
LOC_Os07g10350
Os.48189.1.S1_at--348--10091Chr07:5555258..5555282 (25 bp)
TAGGTCTGATGTATTTTGTGCGTTA
LOC_Os07g10350
Os.48189.1.S1_at--832--10811Chr07:5555273..5555297 (25 bp)
TTGTGCGTTAGTGCTATGGTTGCAT
LOC_Os07g10350
Os.48189.1.S1_at--533--3011Chr07:5555340..5555364 (25 bp)
AATGCAGCCCATTCAGTTTTGTAGG
LOC_Os07g10350
Os.48189.1.S1_at--929--5271Chr07:5555439..5555463 (25 bp)
GAATGTTGCAATTACCTCCTGGTTC
NONE
Os.48189.1.S1_at--768--10451Chr07:5555450..5555915 (25 bp)
TTACCTCCTGGTTCTCATGAAAAAA
NONE
Target Sequence 
TCGTGGCTGCAGAAATTGCGATCAGCAACCTGATGCGACGACTCCTGATAGGTTTCTGCGAGGATCGGCGGTGTAACTGT
CTGAATAGCTGAAGGTCAAGTCCTTGGTCGATGCAGAAACTGAAGAGTGCTAATCATAGAAACGGTGATAGGTCTGATGT
ATTTTGTGCGTTAGTGCTATGGTTGCATATTTTTGATTAGTGNTGCGNACACGAACGTTGTTAAGAGGGAAATGCAGCCC
ATTCAGTTTTGTAGGAATAAGTGTTNTACGCTTGGAATTGTCAAAAGTTTTNACCAAAATATGATGTATACAAACCTTTT
CTTANCATGGAATGTTGCAATTACCTCCTGGTTCTCATGAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis